CsaV3_7G000430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 515171 .. 515599 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAAATGCTAATGTTCGATATACATATTTCTATATACAATTTTTTCGTCGTTAATTAACGACGTAACTTAAGTGTCATTAAAAAAAATCCAAATAAAAAAACTCTTCTAATTTTCCAAAAAATGTCTCGTTTCCTTCGTACGCTACATAACCTTCGCAAACATCTCTATTTGCCATCATCTTGCACCGCCCTCTTCCTCCGTCTGGTGCTTCCTTGTTCCCTCCTTTGTCCAGTTTTGCTTGCGGTGAACGCTCCTCCGTTCAATGCTTCCTTCGTCCAATGTTTGAATCATTCCCTCCTCCATTCTTCCCTTTGTAGGGGTGTTCATTCAGTGCTTTGTCCGATGATTTGTTGCAATGCTCATTCGATGCTTCCTTGTTCCCTTCTACCAGTTTTAATAACTGTAAGTGTTTGAGGTTTTGGCTT

mRNA sequence

ATGTCTCGTTTCCTTCGTACGCTACATAACCTTCGCAAACATCTCTATTTGCCATCATCTTGCACCGCCCTCTTCCTCCGTCTGGTGCTTCCTTGTTCCCTCCTTTGTCCAGTTTTGCTTGCGGTGAACGCTCCTCCGTTCAATGCTTCCTTCGTCCAATGTTTGAATCATTCCCTCCTCCATTCTTCCCTTTGTAGGGGTGTTCATTCAGTGCTTTGTCCGATGATTTGTTGCAATGCTCATTCGATGCTTCCTTGTTCCCTTCTACCAGTTTTAATAACTGTAAGTGTTTGA

Coding sequence (CDS)

ATGTCTCGTTTCCTTCGTACGCTACATAACCTTCGCAAACATCTCTATTTGCCATCATCTTGCACCGCCCTCTTCCTCCGTCTGGTGCTTCCTTGTTCCCTCCTTTGTCCAGTTTTGCTTGCGGTGAACGCTCCTCCGTTCAATGCTTCCTTCGTCCAATGTTTGAATCATTCCCTCCTCCATTCTTCCCTTTGTAGGGGTGTTCATTCAGTGCTTTGTCCGATGATTTGTTGCAATGCTCATTCGATGCTTCCTTGTTCCCTTCTACCAGTTTTAATAACTGTAAGTGTTTGA

Protein sequence

MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLLHSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV
Homology
[Close]
BLAST of CsaV3_7G000430 vs. NCBI nr
Match: KGN43181.1 (hypothetical protein Csa_7G007300 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL 60
          MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL
Sbjct: 1  MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL 60

Query: 61 HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV 98
          HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV
Sbjct: 61 HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV 97

[Close]
BLAST of CsaV3_7G000430 vs. TrEMBL
Match: tr|A0A0A0K5R4|A0A0A0K5R4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007300 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.5e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL 60
          MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL
Sbjct: 1  MSRFLRTLHNLRKHLYLPSSCTALFLRLVLPCSLLCPVLLAVNAPPFNASFVQCLNHSLL 60

Query: 61 HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV 98
          HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV
Sbjct: 61 HSSLCRGVHSVLCPMICCNAHSMLPCSLLPVLITVSV 97

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43181.11.3e-46100.00hypothetical protein Csa_7G007300 [Cucumis sativus][more]
BLAST of CsaV3_7G000430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5R4|A0A0A0K5R4_CUCSA8.5e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000430.1CsaV3_7G000430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000430Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000430Cucumber (Gy14) v2cgybcucB095
CsaV3_7G000430Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000430Cucumber (Gy14) v1cgycucB257
CsaV3_7G000430Cucurbita maxima (Rimu)cmacucB0177
CsaV3_7G000430Cucurbita maxima (Rimu)cmacucB0231
CsaV3_7G000430Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000430Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000430Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000430Cucurbita moschata (Rifu)cmocucB0161
CsaV3_7G000430Cucurbita moschata (Rifu)cmocucB0219
CsaV3_7G000430Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000430Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000430Cucurbita moschata (Rifu)cmocucB0948
CsaV3_7G000430Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000430Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000430Cucurbita pepo (Zucchini)cpecucB0869
CsaV3_7G000430Cucurbita pepo (Zucchini)cpecucB0947
CsaV3_7G000430Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000430Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000430Wild cucumber (PI 183967)cpicucB119
CsaV3_7G000430Wild cucumber (PI 183967)cpicucB415
CsaV3_7G000430Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000430Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000430Bottle gourd (USVL1VR-Ls)cuclsiB570
CsaV3_7G000430Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000430Melon (DHL92) v3.5.1cucmeB568
CsaV3_7G000430Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000430Melon (DHL92) v3.6.1cucmedB554
CsaV3_7G000430Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000430Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000430Watermelon (Charleston Gray)cucwcgB599
CsaV3_7G000430Watermelon (97103) v1cucwmB604
CsaV3_7G000430Watermelon (97103) v1cucwmB634
CsaV3_7G000430Watermelon (97103) v1cucwmB640
CsaV3_7G000430Watermelon (97103) v2cucwmbB539
CsaV3_7G000430Watermelon (97103) v2cucwmbB549
CsaV3_7G000430Watermelon (97103) v2cucwmbB578
CsaV3_7G000430Wax gourdcucwgoB695
CsaV3_7G000430Wax gourdcucwgoB701
CsaV3_7G000430Wax gourdcucwgoB706
CsaV3_7G000430Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000430Cucumber (Chinese Long) v3cuccucB101
CsaV3_7G000430Silver-seed gourdcarcucB0244
CsaV3_7G000430Silver-seed gourdcarcucB0347
CsaV3_7G000430Silver-seed gourdcarcucB1026