CsaV3_7G000260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 392754 .. 393011 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATGAGGGAGGAGCACTAAGCGGTGGGCGGCAGACGAGCAACAACGAACAACGACGACAGACGATGGACGTTCGAGCGACACTTCTTCTTCCCACTCTTTCTCCTTTTCTTTTCTTTCGATTTTACGTCAGTCTCTATTATGTATTCACAGAACAAATGGAAAAAGGAAAGACCGACACAACACAAAAATGTCGATATTTTCAGACTTTCTCCGACGTTTCACTAATGGTGTCATGGAAAGTCCAACCGTAA

mRNA sequence

ATGGAGGATGAGGGAGGAGCACTAAGCGGTGGGCGGCAGACGAGCAACAACGAACAACGACGACAGACGATGGACGTTCGAGCGACACTTCTTCTTCCCACTCTTTCTCCTTTTCTTTTCTTTCGATTTTACGTCAGTCTCTATTATGTATTCACAGAACAAATGGAAAAAGGAAAGACCGACACAACACAAAAATGTCGATATTTTCAGACTTTCTCCGACGTTTCACTAATGGTGTCATGGAAAGTCCAACCGTAA

Coding sequence (CDS)

ATGGAGGATGAGGGAGGAGCACTAAGCGGTGGGCGGCAGACGAGCAACAACGAACAACGACGACAGACGATGGACGTTCGAGCGACACTTCTTCTTCCCACTCTTTCTCCTTTTCTTTTCTTTCGATTTTACGTCAGTCTCTATTATGTATTCACAGAACAAATGGAAAAAGGAAAGACCGACACAACACAAAAATGTCGATATTTTCAGACTTTCTCCGACGTTTCACTAATGGTGTCATGGAAAGTCCAACCGTAA

Protein sequence

MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKTDTTQKCRYFQTFSDVSLMVSWKVQP
Homology
[Close]
BLAST of CsaV3_7G000260 vs. NCBI nr
Match: KGN43166.1 (hypothetical protein Csa_7G004680 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.6e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT 60
          MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT
Sbjct: 1  MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT 60

Query: 61 DTTQKCRYFQTFSDVSLMVSWKVQP 86
          DTTQKCRYFQTFSDVSLMVSWKVQP
Sbjct: 61 DTTQKCRYFQTFSDVSLMVSWKVQP 85

[Close]
BLAST of CsaV3_7G000260 vs. TrEMBL
Match: tr|A0A0A0K5Q2|A0A0A0K5Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004680 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.0e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT 60
          MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT
Sbjct: 1  MEDEGGALSGGRQTSNNEQRRQTMDVRATLLLPTLSPFLFFRFYVSLYYVFTEQMEKGKT 60

Query: 61 DTTQKCRYFQTFSDVSLMVSWKVQP 86
          DTTQKCRYFQTFSDVSLMVSWKVQP
Sbjct: 61 DTTQKCRYFQTFSDVSLMVSWKVQP 85

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43166.14.6e-40100.00hypothetical protein Csa_7G004680 [Cucumis sativus][more]
BLAST of CsaV3_7G000260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5Q2|A0A0A0K5Q2_CUCSA3.0e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000260.1CsaV3_7G000260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000260Silver-seed gourdcarcucB0201
CsaV3_7G000260Silver-seed gourdcarcucB0347
CsaV3_7G000260Silver-seed gourdcarcucB1026
CsaV3_7G000260Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000260Cucumber (Gy14) v2cgybcucB095
CsaV3_7G000260Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000260Cucumber (Gy14) v1cgycucB141
CsaV3_7G000260Cucumber (Gy14) v1cgycucB257
CsaV3_7G000260Cucumber (Gy14) v1cgycucB572
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0177
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0231
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0689
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000260Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0161
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0219
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0674
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000260Cucurbita moschata (Rifu)cmocucB0948
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB0371
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB0869
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB0947
CsaV3_7G000260Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000260Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000260Wild cucumber (PI 183967)cpicucB119
CsaV3_7G000260Wild cucumber (PI 183967)cpicucB415
CsaV3_7G000260Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000260Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000260Bottle gourd (USVL1VR-Ls)cuclsiB570
CsaV3_7G000260Melon (DHL92) v3.5.1cucmeB530
CsaV3_7G000260Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000260Melon (DHL92) v3.5.1cucmeB568
CsaV3_7G000260Melon (DHL92) v3.6.1cucmedB518
CsaV3_7G000260Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000260Melon (DHL92) v3.6.1cucmedB554
CsaV3_7G000260Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000260Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000260Watermelon (Charleston Gray)cucwcgB599
CsaV3_7G000260Watermelon (97103) v1cucwmB604
CsaV3_7G000260Watermelon (97103) v1cucwmB634
CsaV3_7G000260Watermelon (97103) v1cucwmB640
CsaV3_7G000260Watermelon (97103) v2cucwmbB539
CsaV3_7G000260Watermelon (97103) v2cucwmbB549
CsaV3_7G000260Watermelon (97103) v2cucwmbB578
CsaV3_7G000260Wax gourdcucwgoB691
CsaV3_7G000260Wax gourdcucwgoB692
CsaV3_7G000260Wax gourdcucwgoB701
CsaV3_7G000260Wax gourdcucwgoB706
CsaV3_7G000260Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000260Cucumber (Chinese Long) v3cuccucB101