CsaV3_7G000020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 82285 .. 83194 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACATAACTCATTACATATATATATATCTCAGTCATACATAAGAGTTGTCTATGTAGCCATTATGTAGTCGTATCAGTCATCTCTAACAGTCACATCATGCATTATGGTTATGTTAATGCATAATAAGGAAAAACATACAAGCAAACTCTTTAATCTAATATTGATGGTCTAATAGTAGAATCTCATTCTCCTTTCGTGACAGTCAATTTCCAATTAACTCAGTTCTAAACATAGACAAAATTAAAATTAATAATTTTGTCAACCAATCATCCAAATATCTACTTAAGCATTCAAACTTATCCCAAGGCTAAGTTGAAACCAAAACAACCTTAAATGGTAAAAATCCACATATCAAATCTTTCATTTAAATTTAGCCAAATCTCTAAGTAAAAATAATCCAACTCATTCCAATTGTTCTAATTATAAACTTATTTAAAATCCAAGGGATAAATGTTCGCATGTACCCAATCTAACAAAACTTACCGACTCCAATTGCTGAAGGAATATGAGGTTTCGCTTGCTAAATTGGCTTGGACAAGAAAGCCTCGACTCCCTTTATAGAGGAGATAGGCTCGGATGTAAAGGAGGACGGCTCGCGAACGACTCACGAACTAATCGACTTGCGAAGTGGAGAGGTTGCGGCTTAGACTGAGACAGAGGTAAATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGAAGAAGAAGGTGAATAGTTGATAACACGTCT

mRNA sequence

ATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGA

Coding sequence (CDS)

ATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGA

Protein sequence

MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTEQLGRRRVGFFE
Homology
[Close]
BLAST of CsaV3_7G000020 vs. NCBI nr
Match: KGN44076.1 (hypothetical protein Csa_7G169080 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 7.7e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE 60
          MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE
Sbjct: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE 60

Query: 61 QLGRRRVGFFE 72
          QLGRRRVGFFE
Sbjct: 61 QLGRRRVGFFE 71

[Close]
BLAST of CsaV3_7G000020 vs. TrEMBL
Match: tr|A0A0A0K8G3|A0A0A0K8G3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE 60
          MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE
Sbjct: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGESSTVVNERRTKTE 60

Query: 61 QLGRRRVGFFE 72
          QLGRRRVGFFE
Sbjct: 61 QLGRRRVGFFE 71

The following BLAST results are available for this feature:
BLAST of CsaV3_7G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44076.17.7e-33100.00hypothetical protein Csa_7G169080 [Cucumis sativus][more]
BLAST of CsaV3_7G000020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G000020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8G3|A0A0A0K8G3_CUCSA5.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000020.1CsaV3_7G000020.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G000020Cucumber (Chinese Long) v3cuccucB098
CsaV3_7G000020Silver-seed gourdcarcucB0201
CsaV3_7G000020Silver-seed gourdcarcucB0347
CsaV3_7G000020Cucumber (Gy14) v2cgybcucB093
CsaV3_7G000020Cucumber (Gy14) v2cgybcucB348
CsaV3_7G000020Cucumber (Gy14) v1cgycucB141
CsaV3_7G000020Cucumber (Gy14) v1cgycucB572
CsaV3_7G000020Cucurbita maxima (Rimu)cmacucB0177
CsaV3_7G000020Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G000020Cucurbita maxima (Rimu)cmacucB0689
CsaV3_7G000020Cucurbita maxima (Rimu)cmacucB0769
CsaV3_7G000020Cucurbita maxima (Rimu)cmacucB0958
CsaV3_7G000020Cucurbita moschata (Rifu)cmocucB0161
CsaV3_7G000020Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G000020Cucurbita moschata (Rifu)cmocucB0674
CsaV3_7G000020Cucurbita moschata (Rifu)cmocucB0757
CsaV3_7G000020Cucurbita pepo (Zucchini)cpecucB0139
CsaV3_7G000020Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G000020Cucurbita pepo (Zucchini)cpecucB0371
CsaV3_7G000020Cucurbita pepo (Zucchini)cpecucB0869
CsaV3_7G000020Cucurbita pepo (Zucchini)cpecucB1042
CsaV3_7G000020Wild cucumber (PI 183967)cpicucB118
CsaV3_7G000020Bottle gourd (USVL1VR-Ls)cuclsiB524
CsaV3_7G000020Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G000020Melon (DHL92) v3.5.1cucmeB530
CsaV3_7G000020Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G000020Melon (DHL92) v3.6.1cucmedB518
CsaV3_7G000020Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G000020Watermelon (Charleston Gray)cucwcgB558
CsaV3_7G000020Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G000020Watermelon (97103) v1cucwmB634
CsaV3_7G000020Watermelon (97103) v1cucwmB640
CsaV3_7G000020Watermelon (97103) v2cucwmbB539
CsaV3_7G000020Watermelon (97103) v2cucwmbB549
CsaV3_7G000020Wax gourdcucwgoB692
CsaV3_7G000020Wax gourdcucwgoB706