CsaV3_6G052890 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G052890
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 30871894 .. 30872091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGATGTGGGATGA

mRNA sequence

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGATGTGGGATGA

Coding sequence (CDS)

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGATGTGGGATGA

Protein sequence

MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSSEEAEEDVG

Homology

[Close]

BLAST of CsaV3_6G052890 vs. NCBI nr
Match: KGN49519.1 (hypothetical protein Csa_6G526530 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA 60
          MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA
Sbjct: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA 60

Query: 61 EEDVG 66
          EEDVG
Sbjct: 61 EEDVG 65

[Close]

BLAST of CsaV3_6G052890 vs. TrEMBL
Match: tr|A0A0A0KL28|A0A0A0KL28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526530 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA 60
          MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA
Sbjct: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKXXXXXXXXXXXXXXXEA 60

Query: 61 EEDVG 66
          EEDVG
Sbjct: 61 EEDVG 65

The following BLAST results are available for this feature:

BLAST of CsaV3_6G052890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49519.1	3.8e-18	100.00	hypothetical protein Csa_6G526530 [Cucumis sativus]	[more]

BLAST of CsaV3_6G052890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G052890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G052890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KL28\|A0A0A0KL28_CUCSA	2.5e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526530 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G052890.1	CsaV3_6G052890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G052890	CSPI06G37430	Wild cucumber (PI 183967)	cpicucB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G052890	Watermelon (97103) v2	cucwmbB430
CsaV3_6G052890	Wax gourd	cucwgoB640
CsaV3_6G052890	Silver-seed gourd	carcucB0767
CsaV3_6G052890	Silver-seed gourd	carcucB1118
CsaV3_6G052890	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G052890	Cucumber (Gy14) v1	cgycucB028
CsaV3_6G052890	Cucurbita maxima (Rimu)	cmacucB0807
CsaV3_6G052890	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G052890	Cucurbita moschata (Rifu)	cmocucB0791
CsaV3_6G052890	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G052890	Cucurbita pepo (Zucchini)	cpecucB0096
CsaV3_6G052890	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G052890	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G052890	Melon (DHL92) v3.5.1	cucmeB520
CsaV3_6G052890	Melon (DHL92) v3.6.1	cucmedB508
CsaV3_6G052890	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G052890	Watermelon (97103) v1	cucwmB526