CsaV3_6G048610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 28480866 .. 28481066 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAAAAAAGAAGAACAAATAAAGCGGTTCCTTCTTTAAAAAGTTCGACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCATATCATCATACAGAACCGTGA

mRNA sequence

ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAAAAAAGAAGAACAAATAAAGCGGTTCCTTCTTTAAAAAGTTCGACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCATATCATCATACAGAACCGTGA

Coding sequence (CDS)

ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAAAAAAGAAGAACAAATAAAGCGGTTCCTTCTTTAAAAAGTTCGACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCATATCATCATACAGAACCGTGA

Protein sequence

MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSPYHHTEP
Homology
[Close]
BLAST of CsaV3_6G048610 vs. NCBI nr
Match: KGN49068.1 (hypothetical protein Csa_6G511840 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60
          MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP
Sbjct: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60

Query: 61 YHHTEP 67
          YHHTEP
Sbjct: 61 YHHTEP 66

[Close]
BLAST of CsaV3_6G048610 vs. TrEMBL
Match: tr|A0A0A0KHR2|A0A0A0KHR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511840 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60
          MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP
Sbjct: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60

Query: 61 YHHTEP 67
          YHHTEP
Sbjct: 61 YHHTEP 66

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048610 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49068.17.0e-28100.00hypothetical protein Csa_6G511840 [Cucumis sativus][more]
BLAST of CsaV3_6G048610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048610 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHR2|A0A0A0KHR2_CUCSA4.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511840 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048610.1CsaV3_6G048610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G048610CSPI06G33150Wild cucumber (PI 183967)cpicucB363
CsaV3_6G048610Cla97C01G021150Watermelon (97103) v2cucwmbB430
CsaV3_6G048610Bhi03G000484Wax gourdcucwgoB648
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G048610Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G048610Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G048610Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G048610Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G048610Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G048610Cucurbita pepo (Zucchini)cpecucB0654
CsaV3_6G048610Cucurbita pepo (Zucchini)cpecucB0855
CsaV3_6G048610Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G048610Bottle gourd (USVL1VR-Ls)cuclsiB470
CsaV3_6G048610Melon (DHL92) v3.5.1cucmeB520
CsaV3_6G048610Melon (DHL92) v3.6.1cucmedB508
CsaV3_6G048610Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G048610Watermelon (97103) v1cucwmB526
CsaV3_6G048610Watermelon (97103) v2cucwmbB432
CsaV3_6G048610Cucumber (Chinese Long) v3cuccucB053
CsaV3_6G048610Silver-seed gourdcarcucB0674
CsaV3_6G048610Silver-seed gourdcarcucB0972
CsaV3_6G048610Cucumber (Gy14) v2cgybcucB298
CsaV3_6G048610Cucumber (Gy14) v1cgycucB028
CsaV3_6G048610Cucurbita maxima (Rimu)cmacucB0509
CsaV3_6G048610Cucurbita maxima (Rimu)cmacucB0809