CsaV3_6G048530 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G048530
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 28450322 .. 28451110 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGATCCAACGGCCAGCGTGCGACGAATATATGCCATCCCAACACAAAGGGAGATATAATTTATATAATTTATACACATTAAAAGTAATTAAGAGAAAGAGAAAAATTAAATTAAATATTAGGATTCGAATTCCAACCGTCTTTATACAAGAAATCGATTTGCGTTGCTTTTTCATCCTCAAATTATTCCTATACTGTTCCTCTTTTCTTCTTCATTTCCTTCGTCTTCCCTTCCATCCTTTTCATATTCACCATAAACCACACCAGGTTTCTCTCTATTCGATTTTCTCTACAAGTTTCTTTCTGCTGGGTAATTTTCTGTTGAGAGTTCTTCTTCGAATTTACAGGTACTGTTCACATGTTTATTGAATTTTTCTTTGCTTTTGAACTTTCTGCTTTCAAACTTAATCGTATTGGATTTATCTTCAGTACTCACAACTGAGCTAAACTGAAATGAACTGATAGCAAGCTTTGAAGTATTCGTGACCTTTACGGTTTAACTTCGTGTTTTCAGGACTGTTCGGTAGTTTCTGTCTATTCTTTGGAAATGTTATGGAATAATGTATTCGGTTTTTAGTTTGTCCTTTTTTTAATTAAAGCTTCTCAGATATTTAACTTTCGAGCTGAGAATTTCGTTTAAGTATGATTTTTCGGAACTTATTTGTGCTAATGTTAGGTGTTTCTATACTATTTATGTGTGCTATACGCATTTATGTACGTTGAAGTCAATACTTTGAGTTTTGAACTTATGGTCTTGTTTTGAATTTATGTTTCAGGGAATAG

mRNA sequence

ATGAGAAAGATCCAACGGCCAGCGTGCGACGAATATATGCCATCCCAACACAAAGGGAGATATAATTTATATAATTTATACACATTAAAAGTAATTAAGAGAAAGAGAAAAATTAAATTAAATATTAGGATTCGAATTCCAACCGTCTTTATACAAGAAATCGATTTGCGTTGCTTTTTCATCCTCAAATTATTCCTATACTGTTCCTCTTTTCTTCTTCATTTCCTTCGTCTTCCCTTCCATCCTTTTCATATTCACCATAAACCACACCAGGTTTCTCTCTATTCGATTTTCTCTACAAGTTTCTTTCTGCTGGGTAATTTTCTGTTGAGAGTTCTTCTTCGAATTTACAGGGAATAG

Coding sequence (CDS)

ATGAGAAAGATCCAACGGCCAGCGTGCGACGAATATATGCCATCCCAACACAAAGGGAGATATAATTTATATAATTTATACACATTAAAAGTAATTAAGAGAAAGAGAAAAATTAAATTAAATATTAGGATTCGAATTCCAACCGTCTTTATACAAGAAATCGATTTGCGTTGCTTTTTCATCCTCAAATTATTCCTATACTGTTCCTCTTTTCTTCTTCATTTCCTTCGTCTTCCCTTCCATCCTTTTCATATTCACCATAAACCACACCAGGTTTCTCTCTATTCGATTTTCTCTACAAGTTTCTTTCTGCTGGGTAATTTTCTGTTGAGAGTTCTTCTTCGAATTTACAGGGAATAG

Protein sequence

MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKRKIKLNIRIRIPTVFIQEIDLRCFFILKLFLYCSSFLLHFLRLPFHPFHIHHKPHQVSLYSIFSTSFFLLGNFLLRVLLRIYRE

Homology

[Close]

BLAST of CsaV3_6G048530 vs. NCBI nr
Match: KGN49059.1 (hypothetical protein Csa_6G511750 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 7.5e-49
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF 60
           MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF
Sbjct: 1   MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF 60

Query: 61  ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE 120
           ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE
Sbjct: 61  ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE 119

[Close]

BLAST of CsaV3_6G048530 vs. TrEMBL
Match: tr|A0A0A0KJT3|A0A0A0KJT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511750 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.0e-49
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF 60
           MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF
Sbjct: 1   MRKIQRPACDEYMPSQHKGRYNLYNLYTLKVIKRKXXIKLNIRIRIPTVFIQEIDLRCFF 60

Query: 61  ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE 120
           ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE
Sbjct: 61  ILKLFLYCSSFLLHFLRLPFHXXXXXXXXXXXSLYSIFSTSFFLLGNFLLRVLLRIYRE 119

The following BLAST results are available for this feature:

BLAST of CsaV3_6G048530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49059.1	7.5e-49	100.00	hypothetical protein Csa_6G511750 [Cucumis sativus]	[more]

BLAST of CsaV3_6G048530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJT3\|A0A0A0KJT3_CUCSA	5.0e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G048530.1	CsaV3_6G048530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G048530	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_6G048530	Silver-seed gourd	carcucB0442
CsaV3_6G048530	Silver-seed gourd	carcucB0674
CsaV3_6G048530	Cucumber (Gy14) v2	cgybcucB046
CsaV3_6G048530	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G048530	Cucumber (Gy14) v1	cgycucB028
CsaV3_6G048530	Cucurbita maxima (Rimu)	cmacucB0509
CsaV3_6G048530	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G048530	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G048530	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G048530	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G048530	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G048530	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G048530	Cucurbita pepo (Zucchini)	cpecucB0654
CsaV3_6G048530	Cucurbita pepo (Zucchini)	cpecucB0855
CsaV3_6G048530	Wild cucumber (PI 183967)	cpicucB052
CsaV3_6G048530	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G048530	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G048530	Bottle gourd (USVL1VR-Ls)	cuclsiB470
CsaV3_6G048530	Melon (DHL92) v3.5.1	cucmeB520
CsaV3_6G048530	Melon (DHL92) v3.6.1	cucmedB508
CsaV3_6G048530	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G048530	Watermelon (97103) v1	cucwmB526
CsaV3_6G048530	Watermelon (97103) v2	cucwmbB430
CsaV3_6G048530	Watermelon (97103) v2	cucwmbB432
CsaV3_6G048530	Wax gourd	cucwgoB648