CsaV3_6G048420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 28398146 .. 28398757 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGGTATGATGTTGATGTTATCCAGTTTCCACTTACAAGAATAACTGCAAAAGAGAAAAGCCAAAAGACAGAACAGAAGTACAAGAAAGAGAAGCCTCAGATCATCGGATTTGACAGCAAGGCTTGAAAAGCCATTCAGTCCCGAAAGATGGTATTTTGTTAACCGATATCATCATCAGCATATTACTAAAACACTATAAATAATAATGTAGGTCTCATGGCCAGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

mRNA sequence

ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

Coding sequence (CDS)

ATGGAATCCGACTTCCTAACCACAGCTTTCACAAATCACATAAAGGTAAGATCAATGGAATCCGAATGCCAGCAGTCTCCAATGATGTCCCAAGAAGTAAAGGCAGCAACGCTGCTCCACAAGGCAATGGAATATGATACCAACAGCCGATGGAGGTTCCAAACAGGAGCCATCGACATCGACTCTAATTTATTTGTGACGTTAACTCCGGCAATATACGAACATAACGTGTTCGCTCCATATCTAGTAAAGGATTGGATCTATAATCCCCCGCCACATAAAAACAATCAATTACACAACTTTTACAAGAGAGAAATTAAAATGTTTGTCTCATGGCCAGTCCAAGGTGGTAATTGCAGCGACGCTGCTCCACAAGGCGACGGAATATGA

Protein sequence

MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDIDSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCSDAAPQGDGI
Homology
[Close]
BLAST of CsaV3_6G048420 vs. NCBI nr
Match: KGN49050.1 (hypothetical protein Csa_6G511650 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 5.8e-71
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60
           MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI
Sbjct: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60

Query: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120
           DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS
Sbjct: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120

Query: 121 DAAPQGDGI 130
           DAAPQGDGI
Sbjct: 121 DAAPQGDGI 129

[Close]
BLAST of CsaV3_6G048420 vs. TrEMBL
Match: tr|A0A0A0KH71|A0A0A0KH71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511650 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.8e-71
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60
           MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI
Sbjct: 1   MESDFLTTAFTNHIKVRSMESECQQSPMMSQEVKAATLLHKAMEYDTNSRWRFQTGAIDI 60

Query: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120
           DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS
Sbjct: 61  DSNLFVTLTPAIYEHNVFAPYLVKDWIYNPPPHKNNQLHNFYKREIKMFVSWPVQGGNCS 120

Query: 121 DAAPQGDGI 130
           DAAPQGDGI
Sbjct: 121 DAAPQGDGI 129

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048420 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49050.15.8e-71100.00hypothetical protein Csa_6G511650 [Cucumis sativus][more]
BLAST of CsaV3_6G048420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KH71|A0A0A0KH71_CUCSA3.8e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511650 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048420.1CsaV3_6G048420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G048420CSPI06G32960Wild cucumber (PI 183967)cpicucB363
CsaV3_6G048420Cucsa.044710Cucumber (Gy14) v1cgycucB028
CsaV3_6G048420CmaCh03G005800Cucurbita maxima (Rimu)cmacucB0809
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G048420Cucumber (Chinese Long) v3cuccucB053
CsaV3_6G048420Silver-seed gourdcarcucB0442
CsaV3_6G048420Silver-seed gourdcarcucB0674
CsaV3_6G048420Cucumber (Gy14) v2cgybcucB046
CsaV3_6G048420Cucumber (Gy14) v2cgybcucB298
CsaV3_6G048420Cucurbita maxima (Rimu)cmacucB0509
CsaV3_6G048420Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G048420Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G048420Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G048420Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G048420Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G048420Cucurbita pepo (Zucchini)cpecucB0654
CsaV3_6G048420Wild cucumber (PI 183967)cpicucB052
CsaV3_6G048420Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G048420Bottle gourd (USVL1VR-Ls)cuclsiB470
CsaV3_6G048420Melon (DHL92) v3.5.1cucmeB520
CsaV3_6G048420Melon (DHL92) v3.6.1cucmedB508
CsaV3_6G048420Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G048420Watermelon (97103) v1cucwmB526
CsaV3_6G048420Watermelon (97103) v2cucwmbB430
CsaV3_6G048420Watermelon (97103) v2cucwmbB432
CsaV3_6G048420Wax gourdcucwgoB648