CsaV3_6G048210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 28327487 .. 28328091 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAAGTGAACCCAAGATCTCACAAGTCACAATCTTTAGAGGCGAAGGTGCTGTTTAAATACCAAAGGTCTCACACGGACTGACCCTTCTTTATTTCTCTGTCCTTCTCAATGGCCTGTGAGACTGACACAAAAGTCATTATCTTTTTCCTTGATTGGGAAAAGTAAGAAAGTGTGTGTCGGAATCTAAATACGACCCTTAAAATATGCAGCGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGGTTTGTTTCCAGATTTTTGCTTCCGTAATCTTTTTCAGTATTCTCCACTAATAAATATACACCACAAACATTAAATCTTGGTCGTCCAACTGGTCGTTGCCATCTACCCTTCACCATTTGATTTCGGGTTCTTTTTTGTTTTCTTCTCTTTCTTTCTTTTTTATTCCCAAACCCTGTAACCAGTTAATTGTGGAAAGCAAAACAGAGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATGCCCATTCTCTTCGGCCTTGCTTGTTGGATCTCAAAGTCAGGAAATTTGA

mRNA sequence

ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAACGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGTTAATTGTGGAAAGCAAAACAGAGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATGCCCATTCTCTTCGGCCTTGCTTGTTGGATCTCAAAGTCAGGAAATTTGA

Coding sequence (CDS)

ATGAATACAAGAGCCTCTCTTAGAAGAAGAGTCCGGACAAGAAACGAAGAAGAGGAAAAAGGAGCTAACATTCTGAATGGGTTCTTCGTGTCGAAGTTGCTGGCTCTGTTAATTGTGGAAAGCAAAACAGAGGGAATCTTCTTGAAAAGTGAAAGCGCAGGAAAATGCCCATTCTCTTCGGCCTTGCTTGTTGGATCTCAAAGTCAGGAAATTTGA

Protein sequence

MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSSALLVGSQSQEI
Homology
[Close]
BLAST of CsaV3_6G048210 vs. NCBI nr
Match: KGN49030.1 (hypothetical protein Csa_6G510970 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 6.8e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60
          MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS
Sbjct: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60

Query: 61 ALLVGSQSQEI 72
          ALLVGSQSQEI
Sbjct: 61 ALLVGSQSQEI 71

[Close]
BLAST of CsaV3_6G048210 vs. TrEMBL
Match: tr|A0A0A0KH52|A0A0A0KH52_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510970 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60
          MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS
Sbjct: 1  MNTRASLRRRVRTRNEEEEKGANILNGFFVSKLLALLIVESKTEGIFLKSESAGKCPFSS 60

Query: 61 ALLVGSQSQEI 72
          ALLVGSQSQEI
Sbjct: 61 ALLVGSQSQEI 71

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49030.16.8e-29100.00hypothetical protein Csa_6G510970 [Cucumis sativus][more]
BLAST of CsaV3_6G048210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KH52|A0A0A0KH52_CUCSA4.5e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048210.1CsaV3_6G048210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G048210Wax gourdcucwgoB648
CsaV3_6G048210Cucumber (Chinese Long) v3cuccucB053
CsaV3_6G048210Silver-seed gourdcarcucB0442
CsaV3_6G048210Silver-seed gourdcarcucB0674
CsaV3_6G048210Cucumber (Gy14) v2cgybcucB046
CsaV3_6G048210Cucumber (Gy14) v2cgybcucB298
CsaV3_6G048210Cucumber (Gy14) v1cgycucB028
CsaV3_6G048210Cucurbita maxima (Rimu)cmacucB0509
CsaV3_6G048210Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G048210Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G048210Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G048210Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G048210Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G048210Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G048210Cucurbita pepo (Zucchini)cpecucB0654
CsaV3_6G048210Wild cucumber (PI 183967)cpicucB052
CsaV3_6G048210Wild cucumber (PI 183967)cpicucB363
CsaV3_6G048210Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G048210Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G048210Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G048210Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G048210Watermelon (97103) v1cucwmB526
CsaV3_6G048210Watermelon (97103) v2cucwmbB430
CsaV3_6G048210Watermelon (97103) v2cucwmbB433