CsaV3_6G048150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G048150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 28298044 .. 28298253 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

mRNA sequence

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

Coding sequence (CDS)

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

Protein sequence

TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTNKKKSNPTSE

Homology

[Close]

BLAST of CsaV3_6G048150 vs. NCBI nr
Match: KGN49024.1 (hypothetical protein Csa_6G510910 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN 60
          TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN
Sbjct: 15 TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN 74

Query: 61 KKKSNPTSE 70
          KKKSNPTSE
Sbjct: 75 KKKSNPTSE 83

[Close]

BLAST of CsaV3_6G048150 vs. TrEMBL
Match: tr|A0A0A0KJR3|A0A0A0KJR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510910 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN 60
          TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN
Sbjct: 15 TMEKLYSAGSSRHCLNAAXXXXXXXXXXXXXXPLAHGEIRRHKLKRKRESCLRLASETTN 74

Query: 61 KKKSNPTSE 70
          KKKSNPTSE
Sbjct: 75 KKKSNPTSE 83

The following BLAST results are available for this feature:

BLAST of CsaV3_6G048150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49024.1	1.6e-19	100.00	hypothetical protein Csa_6G510910 [Cucumis sativus]	[more]

BLAST of CsaV3_6G048150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJR3\|A0A0A0KJR3_CUCSA	1.1e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510910 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G048150.1	CsaV3_6G048150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G048150	MELO3C008000	Melon (DHL92) v3.5.1	cucmeB517
CsaV3_6G048150	ClCG01G021140	Watermelon (Charleston Gray)	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G048150	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_6G048150	Silver-seed gourd	carcucB0442
CsaV3_6G048150	Silver-seed gourd	carcucB0674
CsaV3_6G048150	Cucumber (Gy14) v2	cgybcucB046
CsaV3_6G048150	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G048150	Cucumber (Gy14) v1	cgycucB028
CsaV3_6G048150	Cucurbita maxima (Rimu)	cmacucB0509
CsaV3_6G048150	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G048150	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G048150	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G048150	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G048150	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G048150	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G048150	Cucurbita pepo (Zucchini)	cpecucB0654
CsaV3_6G048150	Wild cucumber (PI 183967)	cpicucB052
CsaV3_6G048150	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G048150	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G048150	Melon (DHL92) v3.6.1	cucmedB505
CsaV3_6G048150	Watermelon (97103) v1	cucwmB526
CsaV3_6G048150	Watermelon (97103) v2	cucwmbB430
CsaV3_6G048150	Watermelon (97103) v2	cucwmbB433
CsaV3_6G048150	Wax gourd	cucwgoB648