CsaV3_6G047210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G047210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 27866383 .. 27866702 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTTCTTCGTTCTGGCCAAACCTCTTGTGGCCTATCAATCTATCAAATAGTTTATTTTAGCCAGTCCGATAGCTACTCTTCTGATTTGGCTTGGAAACAAGGTTTTTGCTTGCAGTCACTGGCGGAGCCTCTTCAACTGTTTGTTATCTAGTGTTCTTGATGCTGTTTTGATCTTTATGGGCCTGCTATTTGTACTTTGTGTTTAGGGATGGAACATTTCACCCCAAACTGGTGGGGTGGTGGTGTCTCATATGGATGCCCTTAAGCTTATGGTCCTACAGCCAAGGCATCGTCCTTAAAGGTTGTCTTGTCTAA

mRNA sequence

ATGATTTTTCTTCGTTCTGGCCAAACCTCTTGTGGCCTATCAATCTATCAAATAGTTTATTTTAGCCAGTCCGATAGCTACTCTTCTGATTTGGCTTGGAAACAAGGTTTTTGCTTGCAGTCACTGGCGGAGCCTCTTCAACTGGATGGAACATTTCACCCCAAACTGGTGGGGTGGTGGTGTCTCATATGGATGCCCTTAAGCTTATGGTCCTACAGCCAAGGCATCGTCCTTAAAGGTTGTCTTGTCTAA

Coding sequence (CDS)

ATGATTTTTCTTCGTTCTGGCCAAACCTCTTGTGGCCTATCAATCTATCAAATAGTTTATTTTAGCCAGTCCGATAGCTACTCTTCTGATTTGGCTTGGAAACAAGGTTTTTGCTTGCAGTCACTGGCGGAGCCTCTTCAACTGGATGGAACATTTCACCCCAAACTGGTGGGGTGGTGGTGTCTCATATGGATGCCCTTAAGCTTATGGTCCTACAGCCAAGGCATCGTCCTTAAAGGTTGTCTTGTCTAA

Protein sequence

MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWWCLIWMPLSLWSYSQGIVLKGCLV
Homology
[Close]
BLAST of CsaV3_6G047210 vs. NCBI nr
Match: KGN48925.1 (hypothetical protein Csa_6G506020 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.8e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW 60
          MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW
Sbjct: 1  MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW 60

Query: 61 CLIWMPLSLWSYSQGIVLKGCLV 84
          CLIWMPLSLWSYSQGIVLKGCLV
Sbjct: 61 CLIWMPLSLWSYSQGIVLKGCLV 83

[Close]
BLAST of CsaV3_6G047210 vs. TrEMBL
Match: tr|A0A0A0KGP4|A0A0A0KGP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G506020 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW 60
          MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW
Sbjct: 1  MIFLRSGQTSCGLSIYQIVYFSQSDSYSSDLAWKQGFCLQSLAEPLQLDGTFHPKLVGWW 60

Query: 61 CLIWMPLSLWSYSQGIVLKGCLV 84
          CLIWMPLSLWSYSQGIVLKGCLV
Sbjct: 61 CLIWMPLSLWSYSQGIVLKGCLV 83

The following BLAST results are available for this feature:
BLAST of CsaV3_6G047210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48925.12.8e-42100.00hypothetical protein Csa_6G506020 [Cucumis sativus][more]
BLAST of CsaV3_6G047210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGP4|A0A0A0KGP4_CUCSA1.9e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G506020 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G047210.1CsaV3_6G047210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G047210Cucumber (Gy14) v2cgybcucB148
CsaV3_6G047210Cucumber (Gy14) v2cgybcucB298
CsaV3_6G047210Cucumber (Gy14) v1cgycucB028
CsaV3_6G047210Cucumber (Gy14) v1cgycucB503
CsaV3_6G047210Cucurbita maxima (Rimu)cmacucB0226
CsaV3_6G047210Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G047210Cucurbita maxima (Rimu)cmacucB0952
CsaV3_6G047210Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G047210Cucurbita moschata (Rifu)cmocucB0406
CsaV3_6G047210Cucurbita moschata (Rifu)cmocucB0669
CsaV3_6G047210Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G047210Cucurbita moschata (Rifu)cmocucB0939
CsaV3_6G047210Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G047210Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G047210Cucurbita pepo (Zucchini)cpecucB0133
CsaV3_6G047210Cucurbita pepo (Zucchini)cpecucB0353
CsaV3_6G047210Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G047210Wild cucumber (PI 183967)cpicucB184
CsaV3_6G047210Wild cucumber (PI 183967)cpicucB363
CsaV3_6G047210Bottle gourd (USVL1VR-Ls)cuclsiB437
CsaV3_6G047210Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G047210Bottle gourd (USVL1VR-Ls)cuclsiB480
CsaV3_6G047210Bottle gourd (USVL1VR-Ls)cuclsiB498
CsaV3_6G047210Bottle gourd (USVL1VR-Ls)cuclsiB515
CsaV3_6G047210Melon (DHL92) v3.5.1cucmeB458
CsaV3_6G047210Melon (DHL92) v3.5.1cucmeB507
CsaV3_6G047210Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G047210Melon (DHL92) v3.6.1cucmedB447
CsaV3_6G047210Melon (DHL92) v3.6.1cucmedB496
CsaV3_6G047210Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G047210Watermelon (Charleston Gray)cucwcgB448
CsaV3_6G047210Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G047210Watermelon (Charleston Gray)cucwcgB532
CsaV3_6G047210Watermelon (97103) v1cucwmB475
CsaV3_6G047210Watermelon (97103) v1cucwmB500
CsaV3_6G047210Watermelon (97103) v1cucwmB526
CsaV3_6G047210Watermelon (97103) v2cucwmbB430
CsaV3_6G047210Watermelon (97103) v2cucwmbB438
CsaV3_6G047210Watermelon (97103) v2cucwmbB457
CsaV3_6G047210Watermelon (97103) v2cucwmbB522
CsaV3_6G047210Wax gourdcucwgoB637
CsaV3_6G047210Wax gourdcucwgoB648
CsaV3_6G047210Cucumber (Chinese Long) v3cuccucB088
CsaV3_6G047210Cucumber (Chinese Long) v3cuccucB138
CsaV3_6G047210Cucumber (Chinese Long) v3cuccucB146
CsaV3_6G047210Silver-seed gourdcarcucB0442
CsaV3_6G047210Silver-seed gourdcarcucB0674
CsaV3_6G047210Silver-seed gourdcarcucB1025