CsaV3_6G047160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G047160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 27839046 .. 27839310 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTACAAGGCGGTGTCCGTGTCAAATACAACCATAGAATATTGACCAAAAACGCTCATAAGCTTGAAATCAGAGTGTAGTCGTGGGGTCCACCCCTCCTCGTCGGAAAAGAAAGAAAGAAAAAAAAGAGGTTTCTAGAAGAAAATACTTCCCATCAGTACGGAGGAGCTTGCGGTGGGGTCGCCGCCTCCGCCTCCTCCTCCGCCTACTTTCCCGGAAAAATTGAGGCGTTGGATTATCATTCATATTGTTATTGAATGA

mRNA sequence

ATGTGGCTACAAGGCGGTGTCCGTGTCAAATACAACCATAGAATATTGACCAAAAACGCTCATAAGCTTGAAATCAGAGTTACGGAGGAGCTTGCGGTGGGGTCGCCGCCTCCGCCTCCTCCTCCGCCTACTTTCCCGGAAAAATTGAGGCGTTGGATTATCATTCATATTGTTATTGAATGA

Coding sequence (CDS)

ATGTGGCTACAAGGCGGTGTCCGTGTCAAATACAACCATAGAATATTGACCAAAAACGCTCATAAGCTTGAAATCAGAGTTACGGAGGAGCTTGCGGTGGGGTCGCCGCCTCCGCCTCCTCCTCCGCCTACTTTCCCGGAAAAATTGAGGCGTTGGATTATCATTCATATTGTTATTGAATGA

Protein sequence

MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGSPPPPPPPPTFPEKLRRWIIIHIVIE
Homology
[Close]
BLAST of CsaV3_6G047160 vs. NCBI nr
Match: KGN48919.1 (hypothetical protein Csa_6G505960 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE 60
          MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE
Sbjct: 1  MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE 60

[Close]
BLAST of CsaV3_6G047160 vs. TrEMBL
Match: tr|A0A0A0KJD6|A0A0A0KJD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505960 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE 60
          MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE
Sbjct: 1  MWLQGGVRVKYNHRILTKNAHKLEIRVTEELAVGXXXXXXXXXXFPEKLRRWIIIHIVIE 60

The following BLAST results are available for this feature:
BLAST of CsaV3_6G047160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48919.15.4e-19100.00hypothetical protein Csa_6G505960 [Cucumis sativus][more]
BLAST of CsaV3_6G047160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJD6|A0A0A0KJD6_CUCSA3.6e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505960 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G047160.1CsaV3_6G047160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G047160Cucumber (Chinese Long) v3cuccucB085
CsaV3_6G047160Cucumber (Chinese Long) v3cuccucB088
CsaV3_6G047160Cucumber (Chinese Long) v3cuccucB138
CsaV3_6G047160Silver-seed gourdcarcucB0442
CsaV3_6G047160Silver-seed gourdcarcucB0674
CsaV3_6G047160Silver-seed gourdcarcucB1025
CsaV3_6G047160Cucumber (Gy14) v2cgybcucB084
CsaV3_6G047160Cucumber (Gy14) v2cgybcucB298
CsaV3_6G047160Cucumber (Gy14) v1cgycucB028
CsaV3_6G047160Cucurbita maxima (Rimu)cmacucB0226
CsaV3_6G047160Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G047160Cucurbita maxima (Rimu)cmacucB0952
CsaV3_6G047160Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G047160Cucurbita moschata (Rifu)cmocucB0028
CsaV3_6G047160Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G047160Cucurbita moschata (Rifu)cmocucB0939
CsaV3_6G047160Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G047160Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G047160Cucurbita pepo (Zucchini)cpecucB0133
CsaV3_6G047160Cucurbita pepo (Zucchini)cpecucB0353
CsaV3_6G047160Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G047160Cucurbita pepo (Zucchini)cpecucB0984
CsaV3_6G047160Wild cucumber (PI 183967)cpicucB106
CsaV3_6G047160Wild cucumber (PI 183967)cpicucB363
CsaV3_6G047160Bottle gourd (USVL1VR-Ls)cuclsiB437
CsaV3_6G047160Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G047160Bottle gourd (USVL1VR-Ls)cuclsiB480
CsaV3_6G047160Bottle gourd (USVL1VR-Ls)cuclsiB515
CsaV3_6G047160Melon (DHL92) v3.5.1cucmeB458
CsaV3_6G047160Melon (DHL92) v3.5.1cucmeB490
CsaV3_6G047160Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G047160Melon (DHL92) v3.6.1cucmedB447
CsaV3_6G047160Melon (DHL92) v3.6.1cucmedB477
CsaV3_6G047160Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G047160Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G047160Watermelon (Charleston Gray)cucwcgB532
CsaV3_6G047160Watermelon (97103) v1cucwmB500
CsaV3_6G047160Watermelon (97103) v1cucwmB521
CsaV3_6G047160Watermelon (97103) v1cucwmB526
CsaV3_6G047160Watermelon (97103) v2cucwmbB430
CsaV3_6G047160Watermelon (97103) v2cucwmbB457
CsaV3_6G047160Watermelon (97103) v2cucwmbB482
CsaV3_6G047160Watermelon (97103) v2cucwmbB522
CsaV3_6G047160Wax gourdcucwgoB637
CsaV3_6G047160Wax gourdcucwgoB648