CsaV3_6G044710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G044710
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 26472826 .. 26473547 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAGAGGGAAGTGGGAGAAGGAAGAAGAAGAAGAAGAAAAGTATGTGTACAATGTAAAGGTACAGCTAAGTACGGAAAAAGATATGGAGCCCACAAGCGGTGTTGGTGCTAATGCTGCTCATCACTCTGCACTCTGCACTCTGCACCCTGCACTCACTTAGAAAAAGCTATTTCTTTGGTTTTTCTTTTTTCTTTTAACTTTCAATTTCTGTACAAAAAATGCTTACAATATATGTTTCGGTTGTTTCTTTGTTTATTTGTTTAGTTTCTTTTTGAGAATTTTAGATAGCAACAAAGGAGAGAGCAAAAGAGGCTGCTGCCGTATGTATGCCGTGTGGGATTAGGATTATTGACAAATTGCTGTGACTGCCCTCCATTTGGCTTCACTCTTTTCTTTGACTTTACCATCTGTAGATGAAAACCGAGTTGGGTTTGTAGTTTGTAGTTTGTAGTTTGTAGTGAAGTGTGATTAACAAAATCAAGTGCTTTGGAGTATAGTGAATCCTGATATGTATCTGTATTTAGGAAGTGGCAAGTTGTGGGGAGAAATGAGTATGAGATGGAAAGGATAGATAGAGAGACAGAGGGGGGAAAGTGGGTGGAAGAAAGTGAAAGGAAGGGAGGGAGAAGAGGCCCAGTTGATAAATGGGCCACATCAGACTCAGGGTCAGGGGGAAACAACGGACGCCACTTTGGGTTGGCTGGCTCCCAATAA

mRNA sequence

ATGGAAAACAGAGGGAAGTGGGAGAAGGAAGAAGAAGAAGAAGAAAAGTATGTGTACAATGTAAAGATAGCAACAAAGGAGAGAGCAAAAGAGGCTGCTGCCGTATGTATGCCGTGTGGGATTAGGATTATTGACAAATTGCTGAAGTGGCAAGTTGTGGGGAGAAATGAGTATGAGATGGAAAGGATAGATAGAGAGACAGAGGGGGGAAAGTGGGTGGAAGAAAGTGAAAGGAAGGGAGGGAGAAGAGGCCCAGTTGATAAATGGGCCACATCAGACTCAGGGTCAGGGGGAAACAACGGACGCCACTTTGGGTTGGCTGGCTCCCAATAA

Coding sequence (CDS)

ATGGAAAACAGAGGGAAGTGGGAGAAGGAAGAAGAAGAAGAAGAAAAGTATGTGTACAATGTAAAGATAGCAACAAAGGAGAGAGCAAAAGAGGCTGCTGCCGTATGTATGCCGTGTGGGATTAGGATTATTGACAAATTGCTGAAGTGGCAAGTTGTGGGGAGAAATGAGTATGAGATGGAAAGGATAGATAGAGAGACAGAGGGGGGAAAGTGGGTGGAAGAAAGTGAAAGGAAGGGAGGGAGAAGAGGCCCAGTTGATAAATGGGCCACATCAGACTCAGGGTCAGGGGGAAACAACGGACGCCACTTTGGGTTGGCTGGCTCCCAATAA

Protein sequence

MENRGKWEKEEEEEEKYVYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEMERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ
Homology
[Close]
BLAST of CsaV3_6G044710 vs. NCBI nr
Match: KGN48672.1 (hypothetical protein Csa_6G497230 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 2.4e-49
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM 60
           MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM
Sbjct: 1   MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM 60

Query: 61  ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ 111
           ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ
Sbjct: 61  ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ 110

[Close]
BLAST of CsaV3_6G044710 vs. TrEMBL
Match: tr|A0A0A0KJV0|A0A0A0KJV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497230 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM 60
           MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM
Sbjct: 1   MENRGKWEKXXXXXXXXXYNVKIATKERAKEAAAVCMPCGIRIIDKLLKWQVVGRNEYEM 60

Query: 61  ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ 111
           ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ
Sbjct: 61  ERIDRETEGGKWVEESERKGGRRGPVDKWATSDSGSGGNNGRHFGLAGSQ 110

The following BLAST results are available for this feature:
BLAST of CsaV3_6G044710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48672.12.4e-49100.00hypothetical protein Csa_6G497230 [Cucumis sativus][more]
BLAST of CsaV3_6G044710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G044710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G044710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJV0|A0A0A0KJV0_CUCSA1.6e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497230 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G044710.1CsaV3_6G044710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..110

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G044710CSPI06G29490Wild cucumber (PI 183967)cpicucB363
CsaV3_6G044710CsGy6G029010Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G044710Watermelon (97103) v2cucwmbB430
CsaV3_6G044710Watermelon (97103) v2cucwmbB442
CsaV3_6G044710Watermelon (97103) v2cucwmbB521
CsaV3_6G044710Wax gourdcucwgoB652
CsaV3_6G044710Wax gourdcucwgoB667
CsaV3_6G044710Cucumber (Chinese Long) v3cuccucB091
CsaV3_6G044710Cucumber (Chinese Long) v3cuccucB149
CsaV3_6G044710Silver-seed gourdcarcucB0003
CsaV3_6G044710Silver-seed gourdcarcucB0069
CsaV3_6G044710Silver-seed gourdcarcucB0442
CsaV3_6G044710Silver-seed gourdcarcucB0670
CsaV3_6G044710Cucumber (Gy14) v2cgybcucB088
CsaV3_6G044710Cucumber (Gy14) v2cgybcucB151
CsaV3_6G044710Cucumber (Gy14) v1cgycucB126
CsaV3_6G044710Cucumber (Gy14) v1cgycucB256
CsaV3_6G044710Cucumber (Gy14) v1cgycucB490
CsaV3_6G044710Cucurbita maxima (Rimu)cmacucB0222
CsaV3_6G044710Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G044710Cucurbita maxima (Rimu)cmacucB0955
CsaV3_6G044710Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G044710Cucurbita moschata (Rifu)cmocucB0029
CsaV3_6G044710Cucurbita moschata (Rifu)cmocucB0209
CsaV3_6G044710Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G044710Cucurbita moschata (Rifu)cmocucB0942
CsaV3_6G044710Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G044710Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G044710Cucurbita pepo (Zucchini)cpecucB0137
CsaV3_6G044710Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G044710Cucurbita pepo (Zucchini)cpecucB0985
CsaV3_6G044710Cucurbita pepo (Zucchini)cpecucB1032
CsaV3_6G044710Wild cucumber (PI 183967)cpicucB112
CsaV3_6G044710Wild cucumber (PI 183967)cpicucB187
CsaV3_6G044710Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G044710Bottle gourd (USVL1VR-Ls)cuclsiB485
CsaV3_6G044710Bottle gourd (USVL1VR-Ls)cuclsiB514
CsaV3_6G044710Melon (DHL92) v3.5.1cucmeB482
CsaV3_6G044710Melon (DHL92) v3.5.1cucmeB494
CsaV3_6G044710Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G044710Melon (DHL92) v3.6.1cucmedB471
CsaV3_6G044710Melon (DHL92) v3.6.1cucmedB482
CsaV3_6G044710Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G044710Watermelon (Charleston Gray)cucwcgB453
CsaV3_6G044710Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G044710Watermelon (Charleston Gray)cucwcgB531
CsaV3_6G044710Watermelon (97103) v1cucwmB498
CsaV3_6G044710Watermelon (97103) v1cucwmB526
CsaV3_6G044710Watermelon (97103) v1cucwmB560