CsaV3_6G044460 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G044460
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 26307826 .. 26309395 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATATCTATCAAGTCCAACCTACTTGTTCAGTTGAGACCGTGTAGGAGCCCTGGAGGTACAGTTTGGTTTTCTCTATTCTGTATTGGACTTTCACTGTTTAGTAAGCATTGTACACAAATGAGGACCATAAATAAGTTAATGTTTTAATGTTCCGTTAACAGTTTGCTAATATTAATATAGTTGTCTTGGTATCTGCGTTCTTTTTATATTTAAAAGTGAGGATGTCAACAAAACCTCTTTATTCATAGCAGTGTACAACTTATTCTTTGACCATCTTGGGTAACCATCTTCTGCAGAAGACCAAGTATCAAGGAGTTCACATGTTAAGTCCGAAATATATTAGGAAAATAAGAAAGCTTGTCCTTGTCTTTGTTTGTACATATCGATTGTAGCAAAAAGAGGACTTTGGATGAGGTGTGCTGCGAGAAAGCTTTGTGGTAGATTTTAGTTGCACGTGGAGGCTGTCAGAGGAGGAATGATTGATTTTAGGCTTAGTGAAAGGTAATGCAATGGTTTGGCTGATGCTTGTGAGTAAAGCCAGAAGGATTGTTGTTAATCCTTCTTGTTTGTTGGTAATCAAAACGGATGGGGAATGAACATCTACTGTTCTTCTGTCTCTAGGAATGTTTGGATTACAGTGATGAAATGTAAGAATTCAAATGCCGTTCCTACCAACATCTTCCTGTCAATGGCTCTTGAAAACTTTTTTTTTTTCTTTTCTTTTTCTTTTCTAAGAACGTAATAACCACACCTAAGTTTTGGATGCTTCTTATTCATCTGCCGATCAAGTAGATTATACAATTAAGGCGAAAATGTATAGTTGGATTAAAAAACCAAAATGTAGAAATAGTAATAGAGTTTTTTTTTTGCTAATATTTATTGATTTGGTAGAGATATAATATTCAAAGTTACAAGTAGGAAATGCATCATTGAACTTGTATTATCTTCTCATTCATTATCTTTCTGTTTATTTACTTTTTGGGGGCAAAGGAGATACAGAAAGAGGAGGGGATCTGAGTTAAAGTGGATAATTATTTAAGTACTTTCTTCTTTTTTTCCCCAATTTTGTGTTGGTGGTATGTGACGGATATTGTTTGGCTGCTTGTTGGTCTGTTTTAAAAGAAGTGCAAAGTGCTGTCTCTGTATATTTACACTGACTTGAACTGTATGCAATATGCATCCTTAAGACTATTTTATTTCCTTATTTAAAAAAATGCAGATTTTCATTTATATATGAATTCTAGTCTTTGTTAGCATTCATGAGCCCACCCTGGAGACCTGGAAGCAAGCTGTGAAAATCTTCTTGCACCAGACAGAATCAAGAAACCAATGGGGGTTTCAAACGGTGGTTGGGTGTGTTTGGTTGAATTATAACTTCCCTTTCCTTGAGCTTTAATTGAGGCTGCTGCATTCTTATTGAAACATGCAGGTATTTGTGTTGCAATATATTCATTAATGTCCTTTGTCTACAGAGAAGAAAGCAATTGCTCAAAAGAAGAAGGGGGTTCAGCAGAAGAAGCAGCATGTGCAGAACAGTGGGGAAGTATTTAGGCAATTTGAATGA

mRNA sequence

ATGGCCATATCTATCAAGTCCAACCTACTTGTTCAGTTGAGACCGTGTAGGAGCCCTGGAGAGAAGAAAGCAATTGCTCAAAAGAAGAAGGGGGTTCAGCAGAAGAAGCAGCATGTGCAGAACAGTGGGGAAGTATTTAGGCAATTTGAATGA

Coding sequence (CDS)

ATGGCCATATCTATCAAGTCCAACCTACTTGTTCAGTTGAGACCGTGTAGGAGCCCTGGAGAGAAGAAAGCAATTGCTCAAAAGAAGAAGGGGGTTCAGCAGAAGAAGCAGCATGTGCAGAACAGTGGGGAAGTATTTAGGCAATTTGAATGA

Protein sequence

MAISIKSNLLVQLRPCRSPGEKKAIAQKKKGVQQKKQHVQNSGEVFRQFE
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G044460.1CsaV3_6G044460.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G044460Cucumber (Chinese Long) v3cuccucB091
CsaV3_6G044460Silver-seed gourdcarcucB0003
CsaV3_6G044460Silver-seed gourdcarcucB0069
CsaV3_6G044460Silver-seed gourdcarcucB0442
CsaV3_6G044460Cucumber (Gy14) v2cgybcucB088
CsaV3_6G044460Cucumber (Gy14) v2cgybcucB193
CsaV3_6G044460Cucumber (Gy14) v2cgybcucB298
CsaV3_6G044460Cucumber (Gy14) v1cgycucB126
CsaV3_6G044460Cucumber (Gy14) v1cgycucB256
CsaV3_6G044460Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G044460Cucurbita maxima (Rimu)cmacucB0955
CsaV3_6G044460Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G044460Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G044460Cucurbita moschata (Rifu)cmocucB0942
CsaV3_6G044460Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G044460Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G044460Cucurbita pepo (Zucchini)cpecucB0137
CsaV3_6G044460Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G044460Wild cucumber (PI 183967)cpicucB112
CsaV3_6G044460Wild cucumber (PI 183967)cpicucB363
CsaV3_6G044460Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G044460Bottle gourd (USVL1VR-Ls)cuclsiB514
CsaV3_6G044460Melon (DHL92) v3.5.1cucmeB482
CsaV3_6G044460Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G044460Melon (DHL92) v3.6.1cucmedB471
CsaV3_6G044460Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G044460Watermelon (Charleston Gray)cucwcgB450
CsaV3_6G044460Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G044460Watermelon (Charleston Gray)cucwcgB531
CsaV3_6G044460Watermelon (97103) v1cucwmB498
CsaV3_6G044460Watermelon (97103) v1cucwmB526
CsaV3_6G044460Watermelon (97103) v2cucwmbB430
CsaV3_6G044460Watermelon (97103) v2cucwmbB521
CsaV3_6G044460Wax gourdcucwgoB642