CsaV3_6G043700 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G043700
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 25769292 .. 25769525 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGGACGCGTAGCCGTGTCGTGAGGAGAGGAGGGCAAGGGGAGCCCACAATGGGTGCCAGATCAGATTGGGGGAACTTTACAGCTGAATTTGTCCAGCGGAGACAAAGACGGGTGCCGACTGGAGTAGACAACTCGTAAGCAAGGGAAGGACGGCCAACGGTGTGATGTATTAACCAATCATTCATGTTTGTTTTCAGTGCTATTTTTAGTGTCAAACGCCATGGCTGA

mRNA sequence

ATGGGGCGGACGCGTAGCCGTGTCGTGAGGAGAGGAGGGCAAGGGGAGCCCACAATGGGTGCCAGATCAGATTGGGGGAACTTTACAGCTGAATTTGTCCAGCGGAGACAAAGACGGGTGCCGACTGGAGTAGACAACTCTGCTATTTTTAGTGTCAAACGCCATGGCTGA

Coding sequence (CDS)

ATGGGGCGGACGCGTAGCCGTGTCGTGAGGAGAGGAGGGCAAGGGGAGCCCACAATGGGTGCCAGATCAGATTGGGGGAACTTTACAGCTGAATTTGTCCAGCGGAGACAAAGACGGGTGCCGACTGGAGTAGACAACTCTGCTATTTTTAGTGTCAAACGCCATGGCTGA

Protein sequence

MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG
BLAST of CsaV3_6G043700 vs. NCBI nr
Match: KGN48570.1 (hypothetical protein Csa_6G492300 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG 57
          MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG
Sbjct: 1  MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG 56

BLAST of CsaV3_6G043700 vs. TrEMBL
Match: tr|A0A0A0KFV5|A0A0A0KFV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G492300 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG 57
          MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG
Sbjct: 1  MGRTRSRVVRRGGQGEPTMGARSDWGNFTAEFVQRRQRRVPTGVDNSAIFSVKRHG 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48570.11.2e-23100.00hypothetical protein Csa_6G492300 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KFV5|A0A0A0KFV5_CUCSA7.7e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G492300 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G043700.1CsaV3_6G043700.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G043700CSPI06G28520Wild cucumber (PI 183967)cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G043700Wax gourdcucwgoB596
CsaV3_6G043700Wax gourdcucwgoB642
CsaV3_6G043700Cucumber (Chinese Long) v3cuccucB090
CsaV3_6G043700Cucumber (Chinese Long) v3cuccucB153
CsaV3_6G043700Cucumber (Chinese Long) v3cuccucB178
CsaV3_6G043700Silver-seed gourdcarcucB0212
CsaV3_6G043700Silver-seed gourdcarcucB0442
CsaV3_6G043700Silver-seed gourdcarcucB0849
CsaV3_6G043700Cucumber (Gy14) v2cgybcucB087
CsaV3_6G043700Cucumber (Gy14) v2cgybcucB188
CsaV3_6G043700Cucumber (Gy14) v2cgybcucB298
CsaV3_6G043700Cucumber (Gy14) v1cgycucB126
CsaV3_6G043700Cucumber (Gy14) v1cgycucB600
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0221
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0413
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0671
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0748
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0914
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB0954
CsaV3_6G043700Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0026
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0212
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0408
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0655
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0737
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0905
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB0944
CsaV3_6G043700Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0136
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0283
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0364
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0576
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G043700Cucurbita pepo (Zucchini)cpecucB0943
CsaV3_6G043700Wild cucumber (PI 183967)cpicucB111
CsaV3_6G043700Wild cucumber (PI 183967)cpicucB239
CsaV3_6G043700Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G043700Bottle gourd (USVL1VR-Ls)cuclsiB504
CsaV3_6G043700Melon (DHL92) v3.5.1cucmeB481
CsaV3_6G043700Melon (DHL92) v3.5.1cucmeB516
CsaV3_6G043700Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G043700Melon (DHL92) v3.6.1cucmedB470
CsaV3_6G043700Melon (DHL92) v3.6.1cucmedB504
CsaV3_6G043700Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G043700Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G043700Watermelon (Charleston Gray)cucwcgB521
CsaV3_6G043700Watermelon (97103) v1cucwmB486
CsaV3_6G043700Watermelon (97103) v1cucwmB526
CsaV3_6G043700Watermelon (97103) v2cucwmbB430
CsaV3_6G043700Watermelon (97103) v2cucwmbB512