CsaV3_6G043660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G043660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 25746514 .. 25746801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGTACAGCCAGATGGCAGTATAAGATTGGAGGGTCATCTAAGCCAGTTCTACGACGGCATAGCGTAATGTCATTGACGGTTCTCGTTAACGCGACACCAAACCGTGGGTTTTCCTTCTTTCTACGACTTATTCGGCGCCCTGAAAGGCTGAAGAAAGCTGCAGTTTCATCGGCTCTCTATTCCGTTAACATAAAGTGGGTTTCCGTTTCATTCTTCATTCCAACTCCCCCTACTGAAAAAATCTCTCTGTTTCATCTCCTCCAGCTCCCCCTCCCCCTATGA

mRNA sequence

ATGAAGGGTACAGCCAGATGGCAGTATAAGATTGGAGGGTCATCTAAGCCAGTTCTACGACGGCATAGCGTAATGTCATTGACGGTTCTCGTTAACGCGACACCAAACCGTGGGTTTTCCTTCTTTCTACGACTTATTCGGCGCCCTGAAAGGCTGAAGAAAGCTGCAGTTTCATCGGCTCTCTATTCCGTTAACATAAAGTGGGTTTCCGTTTCATTCTTCATTCCAACTCCCCCTACTGAAAAAATCTCTCTGTTTCATCTCCTCCAGCTCCCCCTCCCCCTATGA

Coding sequence (CDS)

ATGAAGGGTACAGCCAGATGGCAGTATAAGATTGGAGGGTCATCTAAGCCAGTTCTACGACGGCATAGCGTAATGTCATTGACGGTTCTCGTTAACGCGACACCAAACCGTGGGTTTTCCTTCTTTCTACGACTTATTCGGCGCCCTGAAAGGCTGAAGAAAGCTGCAGTTTCATCGGCTCTCTATTCCGTTAACATAAAGTGGGTTTCCGTTTCATTCTTCATTCCAACTCCCCCTACTGAAAAAATCTCTCTGTTTCATCTCCTCCAGCTCCCCCTCCCCCTATGA

Protein sequence

MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSALYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL
Homology
[Close]
BLAST of CsaV3_6G043660 vs. NCBI nr
Match: KGN48566.1 (hypothetical protein Csa_6G492260 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA 60
          MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA
Sbjct: 1  MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA 60

Query: 61 LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL 96
          LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL
Sbjct: 61 LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL 95

[Close]
BLAST of CsaV3_6G043660 vs. TrEMBL
Match: tr|A0A0A0KLF5|A0A0A0KLF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G492260 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.0e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA 60
          MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA
Sbjct: 1  MKGTARWQYKIGGSSKPVLRRHSVMSLTVLVNATPNRGFSFFLRLIRRPERLKKAAVSSA 60

Query: 61 LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL 96
          LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL
Sbjct: 61 LYSVNIKWVSVSFFIPTPPTEKISLFHLLQLPLPL 95

The following BLAST results are available for this feature:
BLAST of CsaV3_6G043660 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48566.13.1e-45100.00hypothetical protein Csa_6G492260 [Cucumis sativus][more]
BLAST of CsaV3_6G043660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLF5|A0A0A0KLF5_CUCSA2.0e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G492260 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G043660.1CsaV3_6G043660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G043660CsGy6G027970Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G043660Wax gourdcucwgoB596
CsaV3_6G043660Wax gourdcucwgoB642
CsaV3_6G043660Cucumber (Chinese Long) v3cuccucB090
CsaV3_6G043660Cucumber (Chinese Long) v3cuccucB153
CsaV3_6G043660Cucumber (Chinese Long) v3cuccucB178
CsaV3_6G043660Cucumber (Chinese Long) v3cuccucB216
CsaV3_6G043660Silver-seed gourdcarcucB0212
CsaV3_6G043660Silver-seed gourdcarcucB0442
CsaV3_6G043660Silver-seed gourdcarcucB0849
CsaV3_6G043660Cucumber (Gy14) v2cgybcucB087
CsaV3_6G043660Cucumber (Gy14) v2cgybcucB188
CsaV3_6G043660Cucumber (Gy14) v1cgycucB126
CsaV3_6G043660Cucumber (Gy14) v1cgycucB341
CsaV3_6G043660Cucumber (Gy14) v1cgycucB600
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0221
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0413
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0635
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0671
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0748
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0914
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB0954
CsaV3_6G043660Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0026
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0212
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0408
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0655
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0737
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0905
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB0944
CsaV3_6G043660Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0136
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0283
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0364
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0576
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G043660Cucurbita pepo (Zucchini)cpecucB0943
CsaV3_6G043660Wild cucumber (PI 183967)cpicucB111
CsaV3_6G043660Wild cucumber (PI 183967)cpicucB239
CsaV3_6G043660Wild cucumber (PI 183967)cpicucB363
CsaV3_6G043660Wild cucumber (PI 183967)cpicucB413
CsaV3_6G043660Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G043660Bottle gourd (USVL1VR-Ls)cuclsiB504
CsaV3_6G043660Melon (DHL92) v3.5.1cucmeB472
CsaV3_6G043660Melon (DHL92) v3.5.1cucmeB481
CsaV3_6G043660Melon (DHL92) v3.5.1cucmeB516
CsaV3_6G043660Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G043660Melon (DHL92) v3.6.1cucmedB462
CsaV3_6G043660Melon (DHL92) v3.6.1cucmedB470
CsaV3_6G043660Melon (DHL92) v3.6.1cucmedB504
CsaV3_6G043660Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G043660Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G043660Watermelon (Charleston Gray)cucwcgB521
CsaV3_6G043660Watermelon (97103) v1cucwmB486
CsaV3_6G043660Watermelon (97103) v1cucwmB526
CsaV3_6G043660Watermelon (97103) v2cucwmbB430
CsaV3_6G043660Watermelon (97103) v2cucwmbB512