CsaV3_6G043160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G043160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 25396420 .. 25396754 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGAAACTGATCATCTCTTCCTCTTTTGTCACACCTCCAAAATATTTTGGAGTAAGATAAATTACGTGATTGGCTGGATCAATAATAATCAAAATTGCTACTCCATGTGTGAAGATTTATGCTCCATCATCACGAAGAACAGACAAGGTATCATTCGGTTCAATGTTGTGGTGGCAGCATTATGGACTATTTGGCTTGAGCAGAATAATAGAGTTTTCAACAACAAATTTGCGAGCAACGTCAACATCTGGGAGGACATTTTGCAAGTTTATTGGCCTCTAGTCCTCAAGACATCAACTATTTTTGGGATACTCTCTTGCATCACATGA

mRNA sequence

ATGGCAACGAAACTGATCATCTCTTCCTCTTTTGTCACACCTCCAAAATATTTTGGAAACAGACAAGGTATCATTCGGTTCAATGTTGTGGTGGCAGCATTATGGACTATTTGGCTTGAGCAGAATAATAGAGTTTTCAACAACAAATTTGCGAGCAACGTCAACATCTGGGAGGACATTTTGCAAGTTTATTGGCCTCTAGTCCTCAAGACATCAACTATTTTTGGGATACTCTCTTGCATCACATGA

Coding sequence (CDS)

ATGGCAACGAAACTGATCATCTCTTCCTCTTTTGTCACACCTCCAAAATATTTTGGAAACAGACAAGGTATCATTCGGTTCAATGTTGTGGTGGCAGCATTATGGACTATTTGGCTTGAGCAGAATAATAGAGTTTTCAACAACAAATTTGCGAGCAACGTCAACATCTGGGAGGACATTTTGCAAGTTTATTGGCCTCTAGTCCTCAAGACATCAACTATTTTTGGGATACTCTCTTGCATCACATGA

Protein sequence

MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDILQVYWPLVLKTSTIFGILSCIT
Homology
[Close]
BLAST of CsaV3_6G043160 vs. NCBI nr
Match: KGN48515.1 (hypothetical protein Csa_6G490790 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 7.5e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI 60
          MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI
Sbjct: 1  MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI 60

Query: 61 LQVYWPLVLKTSTIFGILSCIT 83
          LQVYWPLVLKTSTIFGILSCIT
Sbjct: 61 LQVYWPLVLKTSTIFGILSCIT 82

[Close]
BLAST of CsaV3_6G043160 vs. TrEMBL
Match: tr|A0A0A0KFR5|A0A0A0KFR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490790 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI 60
          MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI
Sbjct: 1  MATKLIISSSFVTPPKYFGNRQGIIRFNVVVAALWTIWLEQNNRVFNNKFASNVNIWEDI 60

Query: 61 LQVYWPLVLKTSTIFGILSCIT 83
          LQVYWPLVLKTSTIFGILSCIT
Sbjct: 61 LQVYWPLVLKTSTIFGILSCIT 82

The following BLAST results are available for this feature:
BLAST of CsaV3_6G043160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48515.17.5e-40100.00hypothetical protein Csa_6G490790 [Cucumis sativus][more]
BLAST of CsaV3_6G043160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KFR5|A0A0A0KFR5_CUCSA5.0e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490790 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G043160.1CsaV3_6G043160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G043160Wax gourdcucwgoB588
CsaV3_6G043160Wax gourdcucwgoB650
CsaV3_6G043160Cucumber (Chinese Long) v3cuccucB093
CsaV3_6G043160Cucumber (Chinese Long) v3cuccucB216
CsaV3_6G043160Silver-seed gourdcarcucB0212
CsaV3_6G043160Silver-seed gourdcarcucB0442
CsaV3_6G043160Silver-seed gourdcarcucB0849
CsaV3_6G043160Cucumber (Gy14) v2cgybcucB091
CsaV3_6G043160Cucumber (Gy14) v2cgybcucB188
CsaV3_6G043160Cucumber (Gy14) v2cgybcucB298
CsaV3_6G043160Cucumber (Gy14) v1cgycucB126
CsaV3_6G043160Cucumber (Gy14) v1cgycucB558
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB0039
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB0166
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB0635
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB0954
CsaV3_6G043160Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G043160Cucurbita moschata (Rifu)cmocucB0146
CsaV3_6G043160Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G043160Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0136
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0319
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0722
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0857
CsaV3_6G043160Cucurbita pepo (Zucchini)cpecucB0982
CsaV3_6G043160Wild cucumber (PI 183967)cpicucB239
CsaV3_6G043160Wild cucumber (PI 183967)cpicucB363
CsaV3_6G043160Bottle gourd (USVL1VR-Ls)cuclsiB446
CsaV3_6G043160Bottle gourd (USVL1VR-Ls)cuclsiB458
CsaV3_6G043160Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G043160Bottle gourd (USVL1VR-Ls)cuclsiB484
CsaV3_6G043160Melon (DHL92) v3.5.1cucmeB516
CsaV3_6G043160Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G043160Melon (DHL92) v3.6.1cucmedB432
CsaV3_6G043160Melon (DHL92) v3.6.1cucmedB504
CsaV3_6G043160Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G043160Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G043160Watermelon (Charleston Gray)cucwcgB477
CsaV3_6G043160Watermelon (97103) v1cucwmB526
CsaV3_6G043160Watermelon (97103) v1cucwmB555
CsaV3_6G043160Watermelon (97103) v2cucwmbB430