CsaV3_6G042560 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G042560
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 24988759 .. 24990145 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGGAATGCCTGGGGCTGGGGTGAGCTTTTGTGTACTTGGCCTGGAGATGCCTTCTTGAATCTCGATTGATCCATCTCTTTGGTCTTCATTTTTATTCTTATATGTCCATCTCCCACCAATGTAATAATTTTAGTACTTACGTCTTAGTGTGTACAAAATTTCAAATTTTGGGGAAAATGCCAATTCTATATTTAAAGATAAGCTTTTGATTATCTGAACATTGTGCAGCACACAAGTATTTGGATGGTTAAAACAAGATGAAAAATCATGAAATGAGTTCAATCTATGGTGATTATCAATTTGAAAGAGTATACATTATTAGACAATTAAATTCGATTATGTTCGTTATGGTATTTATTAGACTTATTTTGTATAAATTAATGAAAAAAATTCGAATGTTAAAGACATTATAGACATTTCCTAACAGAAAAAAAGGTGATTGGAAGAGACGAAGGTTCCATAACTTTTTCTTAATTAATTGAATGAATAGTAAAAAATAATAAATTTGACAAAAAAATCCAAAATTTTGATAAAGAAAATTGTCCAAATAATTTTTTGAATATAAATTTGTCCACAGTACAAGTTGAGGTAAGTTTGGTATTTTTGAAGCGTTTTTAAATTAATAAGAGAAAAAATATTTATAAATAGAGTGAAATTTCATGTTTATTTTATTATTAATAATAGTTTGGTAAATGTTGGGTGTGTGTAAAATAATTTTGCTAATTGTTTTTACTCCTTTTTCGTTTTGTTAATTATTAAAATTCTCTCTATGCTCTAAACCCTCCCTCCAATTTTCAGCCACTGCACACTGCCGCCGCTCTTGCCCGACTCCGGCTCAGCGGCTGCCCTCGCACACTGCACTCTCAGCTGCCGCAGATATATTCTTCCCACGAACTCCCCGCTGCTCCTTCCGTCTCTCCGAGCATTCTGAGTTACTTATCTCTATCTTTCTCTCTCAGAATCACCGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGCGCCGCCTTCGTTTATTGTTCAGATCCCCAAGGTTTTAGATTTTTTTTTTGTTTATTGGTTGGTTATCTTCACCCACAGAGAAGAAAATAAAAAAAAATTGTTTATAATTTTTTTTTCAACCCCCAGTCTAAATGATAACATAAAATTGAGAATGTGTAATCACAGGCTAGAGGGATGACAAGGAGCATATTAATCTTATATAAATCAATAATAATAATAATAATAATAACTTGTTGGAACTAAAAAGTTGCTCTGTGGGTGAAGAAATTTGTATTTGAAAATATTGGAAAAATTGTTTTGATGTTAATTGTTATTAGTTGAGGGTACTGATAAATGTCTTGTTGTGATGCGGAACAGTGAAAAGGTAGGACATTGAGA

mRNA sequence

ATGGAAGACGGAATGCCTGGGGCTGGGCCACTGCACACTGCCGCCGCTCTTGCCCGACTCCGGCTCAGCGGCTGCCCTCGCACACTGCACTCTCAGCTGCCGCAGATATATTCTTCCCACGAACTCCCCGCTGCTCCTTCCGTCTCTCCGAGCATTCTGAGTTACTTATCTCTATCTTTCTCTCTCAGAATCACCGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGCGCCGCCTTCGTTTATTGTTCAGATCCCCAAGGTTTTAGATTTTTTTTTTGTTTATTGGTTGGTTATCTTCACCCACAGAGAAGAAAATAAAAAAAAATTGTTTATAATTTTTTTTTCAACCCCCAGTCTAAATGATAACATAAAATTGAGAATGTGTAATCACAGGCTAGAGGGATGA

Coding sequence (CDS)

ATGGAAGACGGAATGCCTGGGGCTGGGCCACTGCACACTGCCGCCGCTCTTGCCCGACTCCGGCTCAGCGGCTGCCCTCGCACACTGCACTCTCAGCTGCCGCAGATATATTCTTCCCACGAACTCCCCGCTGCTCCTTCCGTCTCTCCGAGCATTCTGAGTTACTTATCTCTATCTTTCTCTCTCAGAATCACCGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGCGCCGCCTTCGTTTATTGTTCAGATCCCCAAGGTTTTAGATTTTTTTTTTGTTTATTGGTTGGTTATCTTCACCCACAGAGAAGAAAATAAAAAAAAATTGTTTATAATTTTTTTTTCAACCCCCAGTCTAAATGATAACATAAAATTGAGAATGTGTAATCACAGGCTAGAGGGATGA

Protein sequence

MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSFSLRITEVQPLHAVGEIAPPSFIVQIPKVLDFFFVYWLVIFTHREENKKKLFIIFFSTPSLNDNIKLRMCNHRLEG
Homology
[Close]
BLAST of CsaV3_6G042560 vs. NCBI nr
Match: KGN48452.1 (hypothetical protein Csa_6G487730 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 9.5e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF 60
          MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF
Sbjct: 1  MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF 60

Query: 61 SLRITEVQPLHAVGEIAPPSFIVQIPK 88
          SLRITEVQPLHAVGEIAPPSFIVQIPK
Sbjct: 61 SLRITEVQPLHAVGEIAPPSFIVQIPK 87

[Close]
BLAST of CsaV3_6G042560 vs. TrEMBL
Match: tr|A0A0A0KJA2|A0A0A0KJA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487730 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.3e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF 60
          MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF
Sbjct: 1  MEDGMPGAGPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLSF 60

Query: 61 SLRITEVQPLHAVGEIAPPSFIVQIPK 88
          SLRITEVQPLHAVGEIAPPSFIVQIPK
Sbjct: 61 SLRITEVQPLHAVGEIAPPSFIVQIPK 87

The following BLAST results are available for this feature:
BLAST of CsaV3_6G042560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48452.19.5e-40100.00hypothetical protein Csa_6G487730 [Cucumis sativus][more]
BLAST of CsaV3_6G042560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G042560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G042560 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJA2|A0A0A0KJA2_CUCSA6.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487730 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G042560.1CsaV3_6G042560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G042560Cucumber (Chinese Long) v3cuccucB094
CsaV3_6G042560Silver-seed gourdcarcucB0212
CsaV3_6G042560Silver-seed gourdcarcucB0442
CsaV3_6G042560Silver-seed gourdcarcucB0849
CsaV3_6G042560Cucumber (Gy14) v2cgybcucB090
CsaV3_6G042560Cucumber (Gy14) v2cgybcucB298
CsaV3_6G042560Cucumber (Gy14) v1cgycucB126
CsaV3_6G042560Cucumber (Gy14) v1cgycucB350
CsaV3_6G042560Cucurbita maxima (Rimu)cmacucB0670
CsaV3_6G042560Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G042560Cucurbita maxima (Rimu)cmacucB0954
CsaV3_6G042560Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G042560Cucurbita moschata (Rifu)cmocucB0658
CsaV3_6G042560Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G042560Cucurbita moschata (Rifu)cmocucB0945
CsaV3_6G042560Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G042560Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G042560Cucurbita pepo (Zucchini)cpecucB0136
CsaV3_6G042560Cucurbita pepo (Zucchini)cpecucB0366
CsaV3_6G042560Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G042560Cucurbita pepo (Zucchini)cpecucB1035
CsaV3_6G042560Wild cucumber (PI 183967)cpicucB114
CsaV3_6G042560Wild cucumber (PI 183967)cpicucB363
CsaV3_6G042560Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G042560Bottle gourd (USVL1VR-Ls)cuclsiB507
CsaV3_6G042560Melon (DHL92) v3.5.1cucmeB483
CsaV3_6G042560Melon (DHL92) v3.5.1cucmeB517
CsaV3_6G042560Melon (DHL92) v3.6.1cucmedB472
CsaV3_6G042560Melon (DHL92) v3.6.1cucmedB505
CsaV3_6G042560Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G042560Watermelon (Charleston Gray)cucwcgB525
CsaV3_6G042560Watermelon (97103) v1cucwmB487
CsaV3_6G042560Watermelon (97103) v1cucwmB527
CsaV3_6G042560Watermelon (97103) v2cucwmbB430
CsaV3_6G042560Watermelon (97103) v2cucwmbB513
CsaV3_6G042560Wax gourdcucwgoB588
CsaV3_6G042560Wax gourdcucwgoB604
CsaV3_6G042560Wax gourdcucwgoB650