CsaV3_6G041650 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G041650
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 24235957 .. 24236124 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAG

mRNA sequence

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAG

Coding sequence (CDS)

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCAGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAAGGCCGCCGTGAACGAATGAAGGAGAGAGAGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGAAGCATAG

Protein sequence

MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA
BLAST of CsaV3_6G041650 vs. NCBI nr
Match: KGN48355.1 (hypothetical protein Csa_6G483365 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 56
          MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 55

BLAST of CsaV3_6G041650 vs. TrEMBL
Match: tr|A0A0A0KF64|A0A0A0KF64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 56
          MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERERWRRRKEKGCEA 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48355.11.5e-20100.00hypothetical protein Csa_6G483365 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KF64|A0A0A0KF64_CUCSA1.0e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041650.1CsaV3_6G041650.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G041650CSPI06G26470Wild cucumber (PI 183967)cpicucB363
CsaV3_6G041650MELO3C008055Melon (DHL92) v3.5.1cucmeB521
CsaV3_6G041650MELO3C008055.2Melon (DHL92) v3.6.1cucmedB509
The following gene(s) are paralogous to this gene:

None