CsaV3_6G039340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G039340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtoheme IX farnesyltransferase
Locationchr6 : 22606016 .. 22606692 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGGTAACTCCTCATCTTTTGAATCCGAAGTCTGAACTAAAATTTGTTGTTGTGTAACTTTGGTTGAAGACTGGACTGGACTTAGTATTATATAGAAGAAACCTCTATCACTACTTAGTATTGAGATTTTTGGTTTTGAAATTTTTTTGCAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAA

mRNA sequence

ATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAA

Coding sequence (CDS)

ATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAA

Protein sequence

MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS
Homology
[Close]
BLAST of CsaV3_6G039340 vs. NCBI nr
Match: XP_011657640.1 (PREDICTED: uncharacterized protein LOC101220685 [Cucumis sativus] >KGN48129.1 hypothetical protein Csa_6G439950 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 2.3e-86
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD
Sbjct: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 175

[Close]
BLAST of CsaV3_6G039340 vs. NCBI nr
Match: XP_008449706.1 (PREDICTED: uncharacterized protein LOC103491505 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQS FNQN RPPF+ TKKCSDGVLKIRKFHP HYSASHFSILCA+ESDSQQFEVDPD
Sbjct: 1   MLSLQSFFNQNQRPPFIATKKCSDGVLKIRKFHPFHYSASHFSILCARESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMN+PRSQMRGEMTEI  TLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNLPRSQMRGEMTEIPGTLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSID PLPSSISSDFEKEST+PSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDGPLPSSISSDFEKESTRPSVLQQLPLSSMSISPSLLS 175

[Close]
BLAST of CsaV3_6G039340 vs. NCBI nr
Match: XP_022996085.1 (uncharacterized protein LOC111491401 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 3.9e-54
Identity = 126/175 (72.00%), Postives = 141/175 (80.57%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSL SL NQN RPP + TKK SD VLK +K HP    AS   I+C+KE+DSQQFEVDPD
Sbjct: 11  MLSLHSLLNQNHRPPLLATKKSSD-VLKTKKAHPFPSPASRRCIVCSKETDSQQFEVDPD 70

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKK+ + PKKKVV+   +PR QMRGEM E+SE+ LANSAVVLFI
Sbjct: 71  KARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMRGEMAELSESFLANSAVVLFI 130

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFY VIKPSID PLPSS SS  E ++T+P VLQ LP SS+ ISPSLLS
Sbjct: 131 FSIFYNVLFYAVIKPSIDTPLPSSTSS--ETQATEPPVLQLLPPSSLFISPSLLS 182

[Close]
BLAST of CsaV3_6G039340 vs. NCBI nr
Match: XP_023533692.1 (uncharacterized protein LOC111795475 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 9.7e-53
Identity = 124/175 (70.86%), Postives = 139/175 (79.43%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSL SL NQN RPP + TKK S  VLK +K HP    AS   I+C+KE+DSQQFEVDPD
Sbjct: 11  MLSLHSLLNQNHRPPLLATKK-SSHVLKTKKSHPFPSPASRRCIVCSKETDSQQFEVDPD 70

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKK+ + PK KVV+   +PR QMRGEM E+SE+ LANSAVVLFI
Sbjct: 71  KARQALQELDQQLQSFSKKRATPPKNKVVEGTKLPRDQMRGEMAELSESFLANSAVVLFI 130

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFY VIKPSID PLPS ISS  E +ST+P VLQ LP SS+ ISPSLL+
Sbjct: 131 FSIFYNVLFYAVIKPSIDTPLPSLISS--ETQSTEPPVLQLLPPSSLFISPSLLT 182

[Close]
BLAST of CsaV3_6G039340 vs. NCBI nr
Match: XP_022148727.1 (uncharacterized protein LOC111017318 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 8.5e-49
Identity = 125/179 (69.83%), Postives = 138/179 (77.09%), Query Frame = 0 

Query: 1   MLSLQSLFNQN----LRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFE 60
           MLSL SLFNQN      PP   TKKC  GVL+ R  HP   SA+   I+CA+E DSQQFE
Sbjct: 1   MLSLHSLFNQNQWPLSSPPLSATKKCY-GVLRRRNGHPFPSSAARSCIVCARERDSQQFE 60

Query: 61  VDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAV 120
           +DPDKARQALQELDQQLQSFSKKQV+ PK K  QDM +PR+Q+RGEM+EIS +LLANSAV
Sbjct: 61  MDPDKARQALQELDQQLQSFSKKQVTPPKMK-AQDMKLPRNQIRGEMSEISGSLLANSAV 120

Query: 121 VLFIFSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
            LFIFSI YNVLFYTVIKPSID PL SSISS  E+E T+P VLQQLPLSS  I  S LS
Sbjct: 121 FLFIFSILYNVLFYTVIKPSIDGPLTSSISS--EREPTEPPVLQQLPLSSEFIPSSPLS 175

[Close]
BLAST of CsaV3_6G039340 vs. TAIR10
Match: AT2G01870.1 (unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.4e-10
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 0 

Query: 55  FEVDPDKARQALQELDQQLQSFSKKQ---VSSPKKKVVQDMNVPRSQMRGEMTEISETLL 114
           F++D DKAR+AL++LDQQ++S + ++   ++     VV+  N P   M  E  EIS + L
Sbjct: 40  FQIDRDKAREALKQLDQQIESQADEKPRIINKTSSDVVRTNNDP--IMFEEPPEISGSFL 99

Query: 115 ANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSM 168
            +SA VL   ++FYN+LF TVIKPS+D   P S+  +    +   S + + PLSS+
Sbjct: 100 TSSAFVLLALTLFYNILFITVIKPSMDG--PESVPEE-NSVAMSDSDIVKFPLSSL 150

[Close]
BLAST of CsaV3_6G039340 vs. TrEMBL
Match: tr|A0A0A0KH36|A0A0A0KH36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439950 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD
Sbjct: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 175

[Close]
BLAST of CsaV3_6G039340 vs. TrEMBL
Match: tr|A0A1S3BNA1|A0A1S3BNA1_CUCME (uncharacterized protein LOC103491505 OS=Cucumis melo OX=3656 GN=LOC103491505 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 7.2e-81
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 0 

Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQS FNQN RPPF+ TKKCSDGVLKIRKFHP HYSASHFSILCA+ESDSQQFEVDPD
Sbjct: 1   MLSLQSFFNQNQRPPFIATKKCSDGVLKIRKFHPFHYSASHFSILCARESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMN+PRSQMRGEMTEI  TLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNLPRSQMRGEMTEIPGTLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSID PLPSSISSDFEKEST+PSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDGPLPSSISSDFEKESTRPSVLQQLPLSSMSISPSLLS 175

[Close]
BLAST of CsaV3_6G039340 vs. TrEMBL
Match: tr|A0A2P4LLA2|A0A2P4LLA2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_41938 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-24
Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 23  SDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVS 82
           SD   K R+ HP  +S+    I+ A E DSQ FEVDPDKAR+ALQ+LDQQLQS S+KQ+ 
Sbjct: 37  SDDAFKKRRSHPSSFSS---CIVHAVEKDSQHFEVDPDKAREALQKLDQQLQSLSQKQIK 96

Query: 83  SPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVP 141
            PK +   D+N+ ++QM  EM EISE+ L NSAV LF+F+IFYNVLF TVIKP+ID P
Sbjct: 97  PPKIR-ASDVNLKKAQMTEEMPEISESFLVNSAVALFLFTIFYNVLFITVIKPAIDGP 150

[Close]
BLAST of CsaV3_6G039340 vs. TrEMBL
Match: tr|D7SL34|D7SL34_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02290 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 38  SASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRS 97
           SAS  S + A + DSQQFEVDPDKAR+ALQ+LDQQLQS S+KQ  +P +K   + N+   
Sbjct: 44  SASSVSTVHAVDKDSQQFEVDPDKAREALQKLDQQLQSLSQKQ-DTPPRKTASNQNLAGD 103

Query: 98  QMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSID 139
           QMR E  E+S + LA SA+ L +F+IFYNVLF TVI+PSID
Sbjct: 104 QMREEPVELSGSFLAYSALALVVFTIFYNVLFLTVIQPSID 143

[Close]
BLAST of CsaV3_6G039340 vs. TrEMBL
Match: tr|B9GEZ9|B9GEZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G257400v3 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 58/131 (44.27%), Postives = 92/131 (70.23%), Query Frame = 0 

Query: 44  ILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEM 103
           I+ A E DS+++E+D DKA++ALQ+LDQQLQ+FS+KQ+SSPK +   D+ + R +M  E+
Sbjct: 60  IVHAVEKDSEKYEIDSDKAKEALQKLDQQLQAFSEKQISSPKIR-ASDVKLTRDEMTEEV 119

Query: 104 TEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLP--------SSISSDFEKESTQ 163
            E+S ++L  +A  LF+F+IFYN+ F TV++PS+D PLP        +  ++  E++  +
Sbjct: 120 PEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGPLPKPEPETIQAITATTMERKPPK 179

Query: 164 PSVLQQLPLSS 167
            ++LQ LPL S
Sbjct: 180 EAILQLLPLMS 189

The following BLAST results are available for this feature:
BLAST of CsaV3_6G039340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657640.12.3e-86100.00PREDICTED: uncharacterized protein LOC101220685 [Cucumis sativus] >KGN48129.1 hy... [more]
XP_008449706.11.1e-8093.71PREDICTED: uncharacterized protein LOC103491505 [Cucumis melo][more]
XP_022996085.13.9e-5472.00uncharacterized protein LOC111491401 [Cucurbita maxima][more]
XP_023533692.19.7e-5370.86uncharacterized protein LOC111795475 [Cucurbita pepo subsp. pepo][more]
XP_022148727.18.5e-4969.83uncharacterized protein LOC111017318 [Momordica charantia][more]
BLAST of CsaV3_6G039340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01870.19.4e-1039.66unknown protein[more]
BLAST of CsaV3_6G039340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G039340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KH36|A0A0A0KH36_CUCSA1.5e-86100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439950 PE=4 SV=1[more]
tr|A0A1S3BNA1|A0A1S3BNA1_CUCME7.2e-8193.71uncharacterized protein LOC103491505 OS=Cucumis melo OX=3656 GN=LOC103491505 PE=... [more]
tr|A0A2P4LLA2|A0A2P4LLA2_QUESU2.8e-2459.32Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_41938 PE=4 SV=1[more]
tr|D7SL34|D7SL34_VITVI1.0e-1859.41Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02290 PE=4 SV=... [more]
tr|B9GEZ9|B9GEZ9_POPTR1.0e-1844.27Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G257400v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044723 single-organism carbohydrate metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G039340.1CsaV3_6G039340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37716FAMILY NOT NAMEDcoord: 38..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G039340CSPI06G24170Wild cucumber (PI 183967)cpicucB363
CsaV3_6G039340Cucsa.124170Cucumber (Gy14) v1cgycucB171
CsaV3_6G039340CmaCh02G012530Cucurbita maxima (Rimu)cmacucB0752
CsaV3_6G039340CmoCh02G012940Cucurbita moschata (Rifu)cmocucB0740
CsaV3_6G039340Carg02705Silver-seed gourdcarcucB0965
CsaV3_6G039340Cla008552Watermelon (97103) v1cucwmB537
CsaV3_6G039340MELO3C014589Melon (DHL92) v3.5.1cucmeB503
CsaV3_6G039340ClCG02G023170Watermelon (Charleston Gray)cucwcgB459
CsaV3_6G039340Lsi10G010670Bottle gourd (USVL1VR-Ls)cuclsiB440
CsaV3_6G039340MELO3C014589.2Melon (DHL92) v3.6.1cucmedB490
CsaV3_6G039340Cla97C02G049260Watermelon (97103) v2cucwmbB446
CsaV3_6G039340Bhi10G000227Wax gourdcucwgoB617
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G039340Cucumber (Chinese Long) v3cuccucB052
CsaV3_6G039340Silver-seed gourdcarcucB0560
CsaV3_6G039340Cucumber (Gy14) v2cgybcucB298
CsaV3_6G039340Cucurbita maxima (Rimu)cmacucB0170
CsaV3_6G039340Cucurbita maxima (Rimu)cmacucB0676
CsaV3_6G039340Cucurbita moschata (Rifu)cmocucB0154
CsaV3_6G039340Cucurbita moschata (Rifu)cmocucB0659
CsaV3_6G039340Cucurbita pepo (Zucchini)cpecucB0348
CsaV3_6G039340Cucurbita pepo (Zucchini)cpecucB0921
CsaV3_6G039340Cucurbita pepo (Zucchini)cpecucB0860
CsaV3_6G039340Wild cucumber (PI 183967)cpicucB056
CsaV3_6G039340Bottle gourd (USVL1VR-Ls)cuclsiB516
CsaV3_6G039340Melon (DHL92) v3.5.1cucmeB474
CsaV3_6G039340Melon (DHL92) v3.6.1cucmedB464