CsaV3_6G038820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G038820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 22256315 .. 22256616 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCC

mRNA sequence

ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCC

Coding sequence (CDS)

ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCC

Protein sequence

MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFVESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRX
Homology
[Close]
BLAST of CsaV3_6G038820 vs. NCBI nr
Match: KGN48081.1 (hypothetical protein Csa_6G429110 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60
           MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV
Sbjct: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60

Query: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR 101
           ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR
Sbjct: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR 100

[Close]
BLAST of CsaV3_6G038820 vs. TrEMBL
Match: tr|A0A0A0KK00|A0A0A0KK00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429110 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.7e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60
           MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV
Sbjct: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60

Query: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR 101
           ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR
Sbjct: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHR 100

The following BLAST results are available for this feature:
BLAST of CsaV3_6G038820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48081.11.5e-53100.00hypothetical protein Csa_6G429110 [Cucumis sativus][more]
BLAST of CsaV3_6G038820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G038820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G038820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KK00|A0A0A0KK00_CUCSA9.7e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G038820.1CsaV3_6G038820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G038820CSPI06G23700Wild cucumber (PI 183967)cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G038820Silver-seed gourdcarcucB0560
CsaV3_6G038820Silver-seed gourdcarcucB0965
CsaV3_6G038820Cucumber (Gy14) v2cgybcucB298
CsaV3_6G038820Cucumber (Gy14) v1cgycucB091
CsaV3_6G038820Cucurbita maxima (Rimu)cmacucB0676
CsaV3_6G038820Cucurbita maxima (Rimu)cmacucB0752
CsaV3_6G038820Cucurbita moschata (Rifu)cmocucB0659
CsaV3_6G038820Cucurbita moschata (Rifu)cmocucB0740
CsaV3_6G038820Cucurbita pepo (Zucchini)cpecucB0348
CsaV3_6G038820Cucurbita pepo (Zucchini)cpecucB0921
CsaV3_6G038820Bottle gourd (USVL1VR-Ls)cuclsiB440
CsaV3_6G038820Melon (DHL92) v3.5.1cucmeB503
CsaV3_6G038820Melon (DHL92) v3.6.1cucmedB490
CsaV3_6G038820Watermelon (Charleston Gray)cucwcgB459
CsaV3_6G038820Watermelon (97103) v1cucwmB537
CsaV3_6G038820Watermelon (97103) v2cucwmbB446
CsaV3_6G038820Wax gourdcucwgoB617