CsaV3_6G038730 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G038730
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 22167335 .. 22167581 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGGCCCAAGGCAGCCCGTTCGATTGGCGCTCTTATCTCACTGGGAATCATAGCCCACACACACCGGAAAAATCTCTACGGGCCGGATGATAGTGGATTTCGGATTCTTGCAATTGTAGAATCATCTTCATCTTCACCGCTTATTGCAGATCATCCTAGTTTTTAATTCGTACGCAGTTCAGGTATCATTTGGATTCGAAGAACCGTGGTTGCTGGATTTCATGGACCGAAGCTCAGAGTAG

mRNA sequence

ATGCAATGGCCCAAGGCAGCCCGTTCGATTGGCGCTCTTATCTCACTGGGAATCATAGCCCACACACACCGGAAAAATCTCTACGGGCCGGATGATAGTGGATTTCGGATTCTTGCAATTATCATCCTAGTTTTTAATTCGTACGCAGTTCAGGTATCATTTGGATTCGAAGAACCGTGGTTGCTGGATTTCATGGACCGAAGCTCAGAGTAG

Coding sequence (CDS)

ATGCAATGGCCCAAGGCAGCCCGTTCGATTGGCGCTCTTATCTCACTGGGAATCATAGCCCACACACACCGGAAAAATCTCTACGGGCCGGATGATAGTGGATTTCGGATTCTTGCAATTATCATCCTAGTTTTTAATTCGTACGCAGTTCAGGTATCATTTGGATTCGAAGAACCGTGGTTGCTGGATTTCATGGACCGAAGCTCAGAGTAG

Protein sequence

MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPWLLDFMDRSSE

Homology

[Close]

BLAST of CsaV3_6G038730 vs. NCBI nr
Match: KGN48069.1 (hypothetical protein Csa_6G428020 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW 60
          MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW
Sbjct: 1  MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW 60

Query: 61 LLDFMDRSSE 71
          LLDFMDRSSE
Sbjct: 61 LLDFMDRSSE 70

[Close]

BLAST of CsaV3_6G038730 vs. TrEMBL
Match: tr|A0A0A0KGY9|A0A0A0KGY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G428020 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW 60
          MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW
Sbjct: 1  MQWPKAARSIGALISLGIIAHTHRKNLYGPDDSGFRILAIIILVFNSYAVQVSFGFEEPW 60

Query: 61 LLDFMDRSSE 71
          LLDFMDRSSE
Sbjct: 61 LLDFMDRSSE 70

The following BLAST results are available for this feature:

BLAST of CsaV3_6G038730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48069.1	1.0e-32	100.00	hypothetical protein Csa_6G428020 [Cucumis sativus]	[more]

BLAST of CsaV3_6G038730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G038730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G038730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGY9\|A0A0A0KGY9_CUCSA	6.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G428020 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G038730.1	CsaV3_6G038730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G038730	CsGy6G022910	Cucumber (Gy14) v2	cgybcucB298

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G038730	Silver-seed gourd	carcucB0965
CsaV3_6G038730	Cucumber (Gy14) v1	cgycucB091
CsaV3_6G038730	Cucurbita maxima (Rimu)	cmacucB0676
CsaV3_6G038730	Cucurbita maxima (Rimu)	cmacucB0752
CsaV3_6G038730	Cucurbita moschata (Rifu)	cmocucB0659
CsaV3_6G038730	Cucurbita moschata (Rifu)	cmocucB0740
CsaV3_6G038730	Cucurbita pepo (Zucchini)	cpecucB0348
CsaV3_6G038730	Cucurbita pepo (Zucchini)	cpecucB0921
CsaV3_6G038730	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G038730	Bottle gourd (USVL1VR-Ls)	cuclsiB440
CsaV3_6G038730	Melon (DHL92) v3.5.1	cucmeB503
CsaV3_6G038730	Melon (DHL92) v3.6.1	cucmedB490
CsaV3_6G038730	Watermelon (Charleston Gray)	cucwcgB459
CsaV3_6G038730	Watermelon (97103) v1	cucwmB537
CsaV3_6G038730	Watermelon (97103) v2	cucwmbB446
CsaV3_6G038730	Wax gourd	cucwgoB617