CsaV3_6G036800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 20605394 .. 20605822 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTTCTCCACCGGAAGAGGATTAATTGCATCAAAACCCCTTGTACACACAAACATCACAATTTTCATTTTTAGTCGCTATATCATGAAGTACACCTTCTCCAACAATTTCTTTATTGAACTCCGGCACCGGCAACGAACATGGTAGCGGTGGCAGTGGTTTACACTATCAAGTTTTCGTAGGATATATATATATATATTGGTGTTGAAATTGTTTCCACTACGCCAATGGTTTATTGGCAGTGCCTCTCAAGAGTTGGGGTTGACCGTCCAACAACGAAAAGATGAGATTCCGTGGAGGAAAGCGAGAGATAGGAGGAGGTTTGAGAGAGTAGAGAAGAGAAAGAAAGACGTGGGTGTTATTGTGTATGGAAGAAGAAGACGATACGTAAGAGGGACAAATTTGGAAAAAGAAAACCGGTACTAA

mRNA sequence

ATGATCTTCTCCACCGGAAGAGGATTAATTGCATCAAAACCCCTTGTACACACAAACATCACAATTTTCATTTTTAGTCGCTATATCATGAAGTACACCTTCTCCAACAATTTCTTTATTGAACTCCGGCACCGGCAACGAACATGTGCCTCTCAAGAGTTGGGGTTGACCGTCCAACAACGAAAAGATGAGATTCCGTGGAGGAAAGCGAGAGATAGGAGGAGGTTTGAGAGAGTAGAGAAGAGAAAGAAAGACGTGGGTGTTATTGTGTATGGAAGAAGAAGACGATACGTAAGAGGGACAAATTTGGAAAAAGAAAACCGGTACTAA

Coding sequence (CDS)

ATGATCTTCTCCACCGGAAGAGGATTAATTGCATCAAAACCCCTTGTACACACAAACATCACAATTTTCATTTTTAGTCGCTATATCATGAAGTACACCTTCTCCAACAATTTCTTTATTGAACTCCGGCACCGGCAACGAACATGTGCCTCTCAAGAGTTGGGGTTGACCGTCCAACAACGAAAAGATGAGATTCCGTGGAGGAAAGCGAGAGATAGGAGGAGGTTTGAGAGAGTAGAGAAGAGAAAGAAAGACGTGGGTGTTATTGTGTATGGAAGAAGAAGACGATACGTAAGAGGGACAAATTTGGAAAAAGAAAACCGGTACTAA

Protein sequence

MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQRKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY
Homology
[Close]
BLAST of CsaV3_6G036800 vs. NCBI nr
Match: KGN47857.1 (hypothetical protein Csa_6G408160 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 7.9e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ 60
           MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ
Sbjct: 1   MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ 60

Query: 61  RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY 110
           RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY
Sbjct: 61  RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY 109

[Close]
BLAST of CsaV3_6G036800 vs. TrEMBL
Match: tr|A0A0A0KHJ6|A0A0A0KHJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408160 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.2e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ 60
           MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ
Sbjct: 1   MIFSTGRGLIASKPLVHTNITIFIFSRYIMKYTFSNNFFIELRHRQRTCASQELGLTVQQ 60

Query: 61  RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY 110
           RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY
Sbjct: 61  RKDEIPWRKARDRRRFERVEKRKKDVGVIVYGRRRRYVRGTNLEKENRY 109

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036800 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47857.17.9e-53100.00hypothetical protein Csa_6G408160 [Cucumis sativus][more]
BLAST of CsaV3_6G036800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHJ6|A0A0A0KHJ6_CUCSA5.2e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G036800.1CsaV3_6G036800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G036800CSPI06G21730Wild cucumber (PI 183967)cpicucB363
CsaV3_6G036800CsGy6G021020Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G036800Silver-seed gourdcarcucB0792
CsaV3_6G036800Cucumber (Gy14) v1cgycucB205
CsaV3_6G036800Cucurbita maxima (Rimu)cmacucB0636
CsaV3_6G036800Cucurbita maxima (Rimu)cmacucB0750
CsaV3_6G036800Cucurbita moschata (Rifu)cmocucB0620
CsaV3_6G036800Cucurbita moschata (Rifu)cmocucB0739
CsaV3_6G036800Cucurbita pepo (Zucchini)cpecucB0320
CsaV3_6G036800Bottle gourd (USVL1VR-Ls)cuclsiB496
CsaV3_6G036800Melon (DHL92) v3.5.1cucmeB504
CsaV3_6G036800Melon (DHL92) v3.6.1cucmedB491
CsaV3_6G036800Watermelon (97103) v1cucwmB513
CsaV3_6G036800Watermelon (97103) v2cucwmbB504
CsaV3_6G036800Wax gourdcucwgoB585