CsaV3_6G036490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 20289093 .. 20289603 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGGGCCGGCGGGGCGGCGTTGGAACAGCCACCGGAGACGCGTCGACATGTGTGAGCAATCAATGTTCCAACCCATCACCCATCAACCATCACCCACACTCCCACTCCCTCTCTTTTCCCACTTGCAGTTTTCTTAATTAATAAACACACCCCTTTGATGTGTTCTAGAGTTTTGTTTCTTATTTTATTTTGCTAAACATTTTATAATAATTAATTTTGAAATTAATTTATTTATGTTTCACCTCCTATTGTTAATCCAAAACGAAGAGATTTGAATAATAATAAATGAGAATAAACCGTGGTTACATTTAAAATGTTTATAGTTTGAATAATATTTAAGAGAGAGAGAGAGAGAGAGAGGAGAAAGGGAAGAGGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGGCTTAGGGCAAAGAAGACAGAGATACGGAGAAGGGCCCGCATGGAAGGAAGGGCATTGGATGTCAAATCAAATAAGGCTGTCAATGAGGGTGACACATAG

mRNA sequence

ATGGGCGGGGCCGGCGGGGCGGCGTTGGAACAGCCACCGGAGACGCGTCGACATGTAGAGAGAGAGAGAGAGAGAGGAGAAAGGGAAGAGGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGGCTTAGGGCAAAGAAGACAGAGATACGGAGAAGGGCCCGCATGGAAGGAAGGGCATTGGATGTCAAATCAAATAAGGCTGTCAATGAGGGTGACACATAG

Coding sequence (CDS)

ATGGGCGGGGCCGGCGGGGCGGCGTTGGAACAGCCACCGGAGACGCGTCGACATGTAGAGAGAGAGAGAGAGAGAGGAGAAAGGGAAGAGGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGGCTTAGGGCAAAGAAGACAGAGATACGGAGAAGGGCCCGCATGGAAGGAAGGGCATTGGATGTCAAATCAAATAAGGCTGTCAATGAGGGTGACACATAG

Protein sequence

MGGAGGAALEQPPETRRHVERERERGEREEEEEEEEEGGGGLRAKKTEIRRRARMEGRALDVKSNKAVNEGDT
Homology
[Close]
BLAST of CsaV3_6G036490 vs. NCBI nr
Match: KGN47828.1 (hypothetical protein Csa_6G405900 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-08
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL 60
          MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL
Sbjct: 1  MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL 60

Query: 61 DVKSNKAVNEGDT 74
          DVKSNKAVNEGDT
Sbjct: 61 DVKSNKAVNEGDT 73

[Close]
BLAST of CsaV3_6G036490 vs. TrEMBL
Match: tr|A0A0A0KE46|A0A0A0KE46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405900 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL 60
          MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL
Sbjct: 1  MGGAGGAALEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEIRRRARMEGRAL 60

Query: 61 DVKSNKAVNEGDT 74
          DVKSNKAVNEGDT
Sbjct: 61 DVKSNKAVNEGDT 73

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47828.18.9e-08100.00hypothetical protein Csa_6G405900 [Cucumis sativus][more]
BLAST of CsaV3_6G036490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KE46|A0A0A0KE46_CUCSA5.9e-08100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G036490.1CsaV3_6G036490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..73

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G036490Cucumber (Chinese Long) v3cuccucB206
CsaV3_6G036490Silver-seed gourdcarcucB0301
CsaV3_6G036490Silver-seed gourdcarcucB0727
CsaV3_6G036490Cucumber (Gy14) v2cgybcucB298
CsaV3_6G036490Cucumber (Gy14) v1cgycucB205
CsaV3_6G036490Cucurbita maxima (Rimu)cmacucB0366
CsaV3_6G036490Cucurbita maxima (Rimu)cmacucB0909
CsaV3_6G036490Cucurbita moschata (Rifu)cmocucB0362
CsaV3_6G036490Cucurbita moschata (Rifu)cmocucB0901
CsaV3_6G036490Cucurbita pepo (Zucchini)cpecucB0241
CsaV3_6G036490Cucurbita pepo (Zucchini)cpecucB0571
CsaV3_6G036490Wild cucumber (PI 183967)cpicucB363
CsaV3_6G036490Bottle gourd (USVL1VR-Ls)cuclsiB483
CsaV3_6G036490Bottle gourd (USVL1VR-Ls)cuclsiB510
CsaV3_6G036490Melon (DHL92) v3.5.1cucmeB485
CsaV3_6G036490Melon (DHL92) v3.6.1cucmedB475
CsaV3_6G036490Watermelon (Charleston Gray)cucwcgB516
CsaV3_6G036490Watermelon (97103) v1cucwmB483
CsaV3_6G036490Watermelon (97103) v2cucwmbB474
CsaV3_6G036490Watermelon (97103) v2cucwmbB481
CsaV3_6G036490Watermelon (97103) v2cucwmbB507
CsaV3_6G036490Wax gourdcucwgoB600
CsaV3_6G036490Wax gourdcucwgoB610