CsaV3_6G035690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G035690
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 19670060 .. 19671050 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTAAAACCACAGTATGAAGTCTGAATGCAAAAAGAACAAAATTTAGGCACAAATATTGATATAGTAATATGAAAAATATAAATAAGTAAACAAATAATTGCGTCAGAAATTGCAAGGAATATGAAAGGGAAATAAAACTTGCATGGTTAAGCAAATTCCTCCATAATCAATATTATACTTCATTAATGAATATATAAAATAAAGTCGAGATGAACATCAATTTACAATATCGAACTTTTAGAAGGGACAATTCGCTTCCAGCGGCAAATCTATTTTACGAGCAACACAAGACTAGACCGACCGACCTCAAATTTGACGAACTCATTTTTTGTGCTCTGTTTCTCAGTTCTATATTCTTTCTTGCTCGTTCCCAGAACGTCAGACTTATATCTATTGTTTTCTTCTAAAAGTGACATACATAAATCACAGAAGTTTCAAACAAAAAGCCGAGATATGGGCAAGAAAATTAAACTCAAGAAGCTAATTACAAGCTTTCAGCAACTGGACCTCATACCAGTAAAAAATTGCTTCAGAAGTTCAAATCTTAGGGTTTTTCCCCAATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTAACTGTTGTTGGTCAATAAACGCTCGATTTGATGTTGTTACCGATTGTACTCCCTGCCGTCCGCTTGAATTTGAAGGTAATCTTTTTCAAACTGATAATACGATTCCCTATTTTCATTTTCGTACCTACATTATCTGCCTGTCTATTTAAAGACTTGTCCAGTTCTCACTGCTTTCTCTATCGTGTTTTCTCTTTCTTCCTGCCATTTTTATCCTTAATTGTGATTCTTAAATATGGGTTTGACCATTTAAACAGTTGAAACTTTGAGAGGAAAATTATCAAACGAACCCAACCCAACTAGTGAAAATGGTCAAACTGAATACGTAGTCGAATTCAATGTCTATGAACTTCATGACAAACAATTGAGATACAACTTCAATCCCGACATTTAG

mRNA sequence

ATGGGCAAGAAAATTAAACTCAAGAAGCTAATTACAAGCTTTCAGCAACTGGACCTCATACCAGTAAAAAATTGCTTCAGAAGTTCAAATCTTAGGGTTTTTCCCCAATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTAACTGTTGTTGGTCAATAAACGCTCGATTTGATGTTGTTACCGATTGTACTCCCTGCCGTCCGCTTGAATTTGAAGTTGAAACTTTGAGAGGAAAATTATCAAACGAACCCAACCCAACTAGTGAAAATGGTCAAACTGAATACGTAGTCGAATTCAATGTCTATGAACTTCATGACAAACAATTGAGATACAACTTCAATCCCGACATTTAG

Coding sequence (CDS)

ATGGGCAAGAAAATTAAACTCAAGAAGCTAATTACAAGCTTTCAGCAACTGGACCTCATACCAGTAAAAAATTGCTTCAGAAGTTCAAATCTTAGGGTTTTTCCCCAATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTAACTGTTGTTGGTCAATAAACGCTCGATTTGATGTTGTTACCGATTGTACTCCCTGCCGTCCGCTTGAATTTGAAGTTGAAACTTTGAGAGGAAAATTATCAAACGAACCCAACCCAACTAGTGAAAATGGTCAAACTGAATACGTAGTCGAATTCAATGTCTATGAACTTCATGACAAACAATTGAGATACAACTTCAATCCCGACATTTAG

Protein sequence

MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDVVTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI
Homology
[Close]
BLAST of CsaV3_6G035690 vs. NCBI nr
Match: KGN47750.1 (hypothetical protein Csa_6G399750 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV 60
           MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV
Sbjct: 1   MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV 60

Query: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI 119
           VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI
Sbjct: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI 118

[Close]
BLAST of CsaV3_6G035690 vs. TrEMBL
Match: tr|A0A0A0KDF8|A0A0A0KDF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399750 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.9e-63
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV 60
           MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV
Sbjct: 1   MGKKIKLKKLITSFQQLDLIPVKNCFRSSNLRVFPQFESLSIIEMHLANCCWSINARFDV 60

Query: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI 119
           VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI
Sbjct: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQLRYNFNPDI 118

The following BLAST results are available for this feature:
BLAST of CsaV3_6G035690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47750.11.2e-62100.00hypothetical protein Csa_6G399750 [Cucumis sativus][more]
BLAST of CsaV3_6G035690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G035690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G035690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDF8|A0A0A0KDF8_CUCSA7.9e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G035690.1CsaV3_6G035690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G035690Silver-seed gourdcarcucB0165
CsaV3_6G035690Cucumber (Gy14) v2cgybcucB298
CsaV3_6G035690Cucumber (Gy14) v1cgycucB053
CsaV3_6G035690Cucurbita maxima (Rimu)cmacucB0225
CsaV3_6G035690Cucurbita maxima (Rimu)cmacucB0956
CsaV3_6G035690Cucurbita moschata (Rifu)cmocucB0943
CsaV3_6G035690Cucurbita pepo (Zucchini)cpecucB0138
CsaV3_6G035690Wild cucumber (PI 183967)cpicucB363
CsaV3_6G035690Bottle gourd (USVL1VR-Ls)cuclsiB513
CsaV3_6G035690Melon (DHL92) v3.5.1cucmeB488
CsaV3_6G035690Melon (DHL92) v3.6.1cucmedB476
CsaV3_6G035690Watermelon (Charleston Gray)cucwcgB530
CsaV3_6G035690Watermelon (97103) v1cucwmB497
CsaV3_6G035690Watermelon (97103) v2cucwmbB520
CsaV3_6G035690Wax gourdcucwgoB602