CsaV3_6G034320 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G034320
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 19195530 .. 19195766 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

mRNA sequence

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Coding sequence (CDS)

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Protein sequence

MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMSSVLKGH

Homology

[Close]

BLAST of CsaV3_6G034320 vs. NCBI nr
Match: KGN47714.1 (hypothetical protein Csa_6G383020 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

[Close]

BLAST of CsaV3_6G034320 vs. TrEMBL
Match: tr|A0A0A0KFT5|A0A0A0KFT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383020 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

[Close]

BLAST of CsaV3_6G034320 vs. TrEMBL
Match: tr|A0A1U8KV13|A0A1U8KV13_GOSHI (uncharacterized protein LOC107919692 OS=Gossypium hirsutum OX=3635 GN=LOC107919692 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.4e-04
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 18  EKNFREVYPCS-FVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDM 72
           ++ FR+ Y C  F+D+ RK FL L+QG  T+ +YEKKF +L+K+   +V  E  M
Sbjct: 88  QEEFRKTYICERFMDQKRKEFLDLKQGCLTVTEYEKKFIRLSKYAWEYVSSEAKM 142

The following BLAST results are available for this feature:

BLAST of CsaV3_6G034320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47714.1	9.7e-37	100.00	hypothetical protein Csa_6G383020 [Cucumis sativus]	[more]

BLAST of CsaV3_6G034320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G034320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G034320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFT5\|A0A0A0KFT5_CUCSA	6.4e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383020 PE=4 SV=1	[more]
tr\|A0A1U8KV13\|A0A1U8KV13_GOSHI	9.4e-04	43.64	uncharacterized protein LOC107919692 OS=Gossypium hirsutum OX=3635 GN=LOC1079196...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G034320.1	CsaV3_6G034320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G034320	Silver-seed gourd	carcucB0480
CsaV3_6G034320	Silver-seed gourd	carcucB0875
CsaV3_6G034320	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G034320	Cucurbita maxima (Rimu)	cmacucB0364
CsaV3_6G034320	Cucurbita maxima (Rimu)	cmacucB0908
CsaV3_6G034320	Cucurbita moschata (Rifu)	cmocucB0360
CsaV3_6G034320	Cucurbita moschata (Rifu)	cmocucB0900
CsaV3_6G034320	Cucurbita pepo (Zucchini)	cpecucB0239
CsaV3_6G034320	Cucurbita pepo (Zucchini)	cpecucB0570
CsaV3_6G034320	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G034320	Bottle gourd (USVL1VR-Ls)	cuclsiB511
CsaV3_6G034320	Melon (DHL92) v3.5.1	cucmeB477
CsaV3_6G034320	Melon (DHL92) v3.6.1	cucmedB467
CsaV3_6G034320	Watermelon (Charleston Gray)	cucwcgB526
CsaV3_6G034320	Watermelon (97103) v1	cucwmB493
CsaV3_6G034320	Watermelon (97103) v2	cucwmbB516
CsaV3_6G034320	Wax gourd	cucwgoB591