CsaV3_6G033940 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G033940
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 18742500 .. 18742794 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGTCAGAAGAATCCCATTCAACTAACCTCACGCTTTGCTCGTGACTTTTCTCGTTTTAGGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

mRNA sequence

ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Coding sequence (CDS)

ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Protein sequence

MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIGPVFWIHEARFSS

Homology

[Close]

BLAST of CsaV3_6G033940 vs. NCBI nr
Match: KGN47676.1 (hypothetical protein Csa_6G373200 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60
          MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR
Sbjct: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60

Query: 61 FGLHIGPVFWIHEARFSS 79
          FGLHIGPVFWIHEARFSS
Sbjct: 61 FGLHIGPVFWIHEARFSS 78

[Close]

BLAST of CsaV3_6G033940 vs. TrEMBL
Match: tr|A0A0A0KIS7|A0A0A0KIS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.4e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60
          MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR
Sbjct: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60

Query: 61 FGLHIGPVFWIHEARFSS 79
          FGLHIGPVFWIHEARFSS
Sbjct: 61 FGLHIGPVFWIHEARFSS 78

The following BLAST results are available for this feature:

BLAST of CsaV3_6G033940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47676.1	5.1e-38	100.00	hypothetical protein Csa_6G373200 [Cucumis sativus]	[more]

BLAST of CsaV3_6G033940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G033940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G033940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIS7\|A0A0A0KIS7_CUCSA	3.4e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G033940.1	CsaV3_6G033940.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G033940	CSPI06G19910	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G033940	Cp4.1LG07g01020	Cucurbita pepo (Zucchini)	cpecucB1031
CsaV3_6G033940	MELO3C011398	Melon (DHL92) v3.5.1	cucmeB475
CsaV3_6G033940	ClCG08G010630	Watermelon (Charleston Gray)	cucwcgB514
CsaV3_6G033940	MELO3C011398.2	Melon (DHL92) v3.6.1	cucmedB465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G033940	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G033940	Cucumber (Gy14) v1	cgycucB508
CsaV3_6G033940	Melon (DHL92) v3.6.1	cucmedB467