CsaV3_6G028490 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G028490
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 16763387 .. 16763556 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

mRNA sequence

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

Coding sequence (CDS)

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

Protein sequence

MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHSX

Homology

[Close]

BLAST of CsaV3_6G028490 vs. NCBI nr
Match: KGN47449.1 (hypothetical protein Csa_6G326160 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 42/61 (68.85%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4  PNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 57
          P  RPW+    A    S        KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH
Sbjct: 14 PCRRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 73

[Close]

BLAST of CsaV3_6G028490 vs. TrEMBL
Match: tr|A0A0A0KF56|A0A0A0KF56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 42/61 (68.85%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4  PNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 57
          P  RPW+    A    S        KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH
Sbjct: 14 PCRRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 73

The following BLAST results are available for this feature:

BLAST of CsaV3_6G028490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47449.1	3.0e-11	68.85	hypothetical protein Csa_6G326160 [Cucumis sativus]	[more]

BLAST of CsaV3_6G028490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G028490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G028490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF56\|A0A0A0KF56_CUCSA	2.0e-11	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G028490.1	CsaV3_6G028490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_6G028490	CsaV3_UNG230150	Cucumber (Chinese Long) v3	cuccucB064

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G028490	Wax gourd	cucwgoB565
CsaV3_6G028490	Silver-seed gourd	carcucB0087
CsaV3_6G028490	Silver-seed gourd	carcucB0744
CsaV3_6G028490	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G028490	Cucumber (Gy14) v1	cgycucB374
CsaV3_6G028490	Cucurbita maxima (Rimu)	cmacucB0452
CsaV3_6G028490	Cucurbita maxima (Rimu)	cmacucB1078
CsaV3_6G028490	Cucurbita moschata (Rifu)	cmocucB0445
CsaV3_6G028490	Cucurbita moschata (Rifu)	cmocucB1059
CsaV3_6G028490	Cucurbita pepo (Zucchini)	cpecucB0178
CsaV3_6G028490	Cucurbita pepo (Zucchini)	cpecucB0409
CsaV3_6G028490	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G028490	Bottle gourd (USVL1VR-Ls)	cuclsiB427
CsaV3_6G028490	Melon (DHL92) v3.5.1	cucmeB452
CsaV3_6G028490	Melon (DHL92) v3.6.1	cucmedB443
CsaV3_6G028490	Watermelon (Charleston Gray)	cucwcgB500
CsaV3_6G028490	Watermelon (97103) v1	cucwmB568
CsaV3_6G028490	Watermelon (97103) v2	cucwmbB490