CsaV3_6G028470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G028470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr6 : 16755818 .. 16756599 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTGAAAGAAGGACGTTCCTTATTGATGAAGATTCAAAAACCCCTAATACCGTTCGTGCTAAATTCCAACCCCATCATCAATCCCCGTGATCCCAACAAACAACAACTTCTGCAAGAATCCGACGTGCTCAAACGATTGAAAACGGATCGGAATCTCTCGTCGGTCTTAGGATTCTTTAGCGCCATTGCCAATTCAAATGCCTTCCAGCACACCGCATCGACGTACAGAGTCATGATCGAGAGGCTCGGCCGTGAATGTGAAATGGATATGGTGCAGTACATTTTACAGCAAATGAAGATGGATGGAATTAATTGCTGTGAAGATTTGTTCATATGTATAATCAATGGTTATAAACGCGTTGGCTCCGCCGAGCAGGCGCTTAAGATGTTTTATCGGATTGGAGAATTTGGCTGCAAGCCGACGGTGAGGATATACAATCATCTTTTGGATGCATTGTTGAGTGAAAACAAGTTTCAGATGATTAATCCATTGTATACTAACATGAAGAAAGATGGGTTAATTCCTAATGTCTTCACATATAATATACTTTTGAAAGCATTGTGTAGAATGATCGGGTTGATGCTGCACACAAGCTGTTTGTTGAAATGTCAAATAAGGGATGCCCACCTGATGCGGTTACCTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGCAAGATTGATGATGCTAGAGAGCTTGCGGGAAGATTTAAACCGAGTGTTCCTGTTTATAATGCTTTGATGGGATGTGTAAGAAGGAAAGAATTGAGGTAG

mRNA sequence

ATGTATTTGAAAGAAGGACGTTCCTTATTGATGAAGATTCAAAAACCCCTAATACCGTTCGTGCTAAATTCCAACCCCATCATCAATCCCCGTGATCCCAACAAACAACAACTTCTGCAAGAATCCGACGTGCTCAAACGATTGAAAACGGATCGGAATCTCTCGTCGGTCTTAGGATTCTTTAGCGCCATTGCCAATTCAAATGCCTTCCAGCACACCGCATCGACGTACAGAGTCATGATCGAGAGGCTCGGCCGTGAATGTGAAATGGATATGGTGCAGTACATTTTACAGCAAATGAAGATGGATGGAATTAATTGCTGTGAAGATTTGTTCATATGTATAATCAATGGTTATAAACGCGTTGGCTCCGCCGAGCAGGCGCTTAAGATGTTTTATCGGATTGGAGAATTTGGCTGCAAGCCGACGAATGATCGGGTTGATGCTGCACACAAGCTGTTTGTTGAAATGTCAAATAAGGGATGCCCACCTGATGCGGTTACCTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGCAAGATTGATGATGCTAGAGAGCTTGCGGGAAGATTTAAACCGAGTGTTCCTGTTTATAATGCTTTGATGGGATGTGTAAGAAGGAAAGAATTGAGGTAG

Coding sequence (CDS)

ATGTATTTGAAAGAAGGACGTTCCTTATTGATGAAGATTCAAAAACCCCTAATACCGTTCGTGCTAAATTCCAACCCCATCATCAATCCCCGTGATCCCAACAAACAACAACTTCTGCAAGAATCCGACGTGCTCAAACGATTGAAAACGGATCGGAATCTCTCGTCGGTCTTAGGATTCTTTAGCGCCATTGCCAATTCAAATGCCTTCCAGCACACCGCATCGACGTACAGAGTCATGATCGAGAGGCTCGGCCGTGAATGTGAAATGGATATGGTGCAGTACATTTTACAGCAAATGAAGATGGATGGAATTAATTGCTGTGAAGATTTGTTCATATGTATAATCAATGGTTATAAACGCGTTGGCTCCGCCGAGCAGGCGCTTAAGATGTTTTATCGGATTGGAGAATTTGGCTGCAAGCCGACGAATGATCGGGTTGATGCTGCACACAAGCTGTTTGTTGAAATGTCAAATAAGGGATGCCCACCTGATGCGGTTACCTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGCAAGATTGATGATGCTAGAGAGCTTGCGGGAAGATTTAAACCGAGTGTTCCTGTTTATAATGCTTTGATGGGATGTGTAAGAAGGAAAGAATTGAGGTAG

Protein sequence

MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALMGCVRRKELR
Homology
[Close]
BLAST of CsaV3_6G028470 vs. NCBI nr
Match: XP_004148797.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Cucumis sativus] >KGN47445.1 hypothetical protein Csa_6G324890 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.9e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF
Sbjct: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK
Sbjct: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           RVGSAEQALKMFYRIGEFGCKPT
Sbjct: 121 RVGSAEQALKMFYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. NCBI nr
Match: XP_016902287.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Cucumis melo] >XP_016902288.1 PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 1.5e-71
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEG SLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSS LGF
Sbjct: 1   MYLKEGCSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSALGF 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           F+AIANSNAFQHTASTYRVMIE+LGRECEMD+VQYILQQMKMDGINCCEDLFICIINGYK
Sbjct: 61  FTAIANSNAFQHTASTYRVMIEKLGRECEMDVVQYILQQMKMDGINCCEDLFICIINGYK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           RVGSAEQALK+FYRIGEFGCKPT
Sbjct: 121 RVGSAEQALKLFYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. NCBI nr
Match: XP_023000585.1 (pentatricopeptide repeat-containing protein At3g48810 isoform X1 [Cucurbita maxima] >XP_023000586.1 pentatricopeptide repeat-containing protein At3g48810 isoform X1 [Cucurbita maxima] >XP_023000587.1 pentatricopeptide repeat-containing protein At3g48810 isoform X1 [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 2.4e-61
Identity = 117/143 (81.82%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEG SLL+KIQKPL+PFVLNS+PIINPR+PNKQ LLQESDVLK+LK +RNLSS L +
Sbjct: 1   MYLKEGCSLLLKIQKPLMPFVLNSSPIINPREPNKQHLLQESDVLKQLKRERNLSSALQY 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           F A+ANSNAF+HTASTY++MIE+LGRECEMD+VQYILQQMKMDG+NCCEDLF+ IIN +K
Sbjct: 61  FCAVANSNAFKHTASTYKLMIEKLGRECEMDVVQYILQQMKMDGVNCCEDLFVSIINSHK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           R GSAEQALKM YRIGEFGCKPT
Sbjct: 121 RAGSAEQALKMLYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. NCBI nr
Match: XP_023000588.1 (pentatricopeptide repeat-containing protein At3g48810 isoform X2 [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 2.4e-61
Identity = 117/143 (81.82%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEG SLL+KIQKPL+PFVLNS+PIINPR+PNKQ LLQESDVLK+LK +RNLSS L +
Sbjct: 1   MYLKEGCSLLLKIQKPLMPFVLNSSPIINPREPNKQHLLQESDVLKQLKRERNLSSALQY 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           F A+ANSNAF+HTASTY++MIE+LGRECEMD+VQYILQQMKMDG+NCCEDLF+ IIN +K
Sbjct: 61  FCAVANSNAFKHTASTYKLMIEKLGRECEMDVVQYILQQMKMDGVNCCEDLFVSIINSHK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           R GSAEQALKM YRIGEFGCKPT
Sbjct: 121 RAGSAEQALKMLYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. NCBI nr
Match: XP_023513745.1 (pentatricopeptide repeat-containing protein At3g48810 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 2.0e-60
Identity = 115/143 (80.42%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEG SLL+KIQKPL+PFVLNS+PIINPR+PNKQ LL ESDVLK+LK +RNLSS L +
Sbjct: 1   MYLKEGCSLLLKIQKPLMPFVLNSSPIINPREPNKQHLLHESDVLKQLKKERNLSSALQY 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           F A+ANSNAF+HTASTY++MIE+LGREC+MD+VQYILQQMKMDG+NCCEDLF+ IIN +K
Sbjct: 61  FCAVANSNAFKHTASTYKLMIEKLGRECQMDVVQYILQQMKMDGVNCCEDLFVSIINSHK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           R GSAEQALKM YRIGEFGCKPT
Sbjct: 121 RAGSAEQALKMLYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 154.8 bits (390), Expect = 5.8e-38
Identity = 79/146 (54.11%), Postives = 108/146 (73.97%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIIN---PRDPNKQQLLQESDVLKRLKTDRNLSSV 60
           MYLKEG SLL+K+QKPLIPFVLN+N  +N      PN  + ++E DV+KRL+ +  +   
Sbjct: 1   MYLKEGCSLLLKVQKPLIPFVLNTNLNVNHLLTESPNHAE-IKELDVVKRLRQESCVPLA 60

Query: 61  LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIIN 120
           L FF +IANSN F+HT  T+ VMI +L  + ++D VQY+LQQMK+ G +C EDLFI +I+
Sbjct: 61  LHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVIS 120

Query: 121 GYKRVGSAEQALKMFYRIGEFGCKPT 144
            Y++VG AE+A++MFYRI EFGC P+
Sbjct: 121 VYRQVGLAERAVEMFYRIKEFGCDPS 145

[Close]
BLAST of CsaV3_6G028470 vs. TAIR10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11
Identity = 46/188 (24.47%), Postives = 83/188 (44.15%), Query Frame = 0 

Query: 42  SDVLKRLKTDRNLSSVLGFF-SAIAN-SNAFQHTASTYRVMIERLGRECEMDMVQYILQQ 101
           S V+K ++ ++++   +  F SA A  +N + H  S++  M+ RL    +    + ++ +
Sbjct: 17  SQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVR 76

Query: 102 MKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT---------------- 161
           MK++     ED+ + I  GY RV     +L++F+++ +F C P+                
Sbjct: 77  MKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQ 136

Query: 162 --------------------------------ND-RVDAAHKLFVEMSNKGCPPDAVTYT 179
                                           ND  VDA  K+F+EM  +GC PD+ TY 
Sbjct: 137 LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG 196

[Close]
BLAST of CsaV3_6G028470 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 47/202 (23.27%), Postives = 82/202 (40.59%), Query Frame = 0 

Query: 37  QLLQESDVLKRLKTDRNLSSVLGFF-SAIANSNAFQHTASTYRVMIERLGRECEMDMVQY 96
           ++L  S + + LK  +N  + L  F  A     ++ H  S Y  MI+ LG+   +  ++Y
Sbjct: 8   RVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKY 67

Query: 97  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCK-------------- 156
           ++++MK D   C + +F  +I  + R G  E A+ +F  + EF C               
Sbjct: 68  VIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMV 127

Query: 157 -------------------PTNDRV----------------DAAHKLFVEMSNKGCPPDA 189
                                N R+                D A ++F EM+ +GC PD 
Sbjct: 128 KESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDR 187

[Close]
BLAST of CsaV3_6G028470 vs. TAIR10
Match: AT3G13150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-11
Identity = 45/133 (33.83%), Postives = 62/133 (46.62%), Query Frame = 0 

Query: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQ-QMKMDGINCCEDLFICIINGYKRVGSA 126
           S +F+     Y   I RL    +   +  +LQ Q K D I   ED  I I+  Y   G A
Sbjct: 80  SESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIK-SEDFVIRIMLLYGYSGMA 139

Query: 127 EQALKMFYRIGEFGCKPT-------------NDRVDAAHKLFVEMSNK-GCPPDAVTYTT 185
           E A K+F  + E  C+ T             + ++D A K F E+  K G  PD VTY T
Sbjct: 140 EHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNT 199

[Close]
BLAST of CsaV3_6G028470 vs. TAIR10
Match: AT3G16010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 42/162 (25.93%), Postives = 73/162 (45.06%), Query Frame = 0 

Query: 48  LKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEM--DMVQYILQQMKMDGI 107
           L+ D  ++  + FF        FQH  STY  +I  L  E  +  +M + I + ++   +
Sbjct: 100 LEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCL-EEARLYGEMYRTIQEVVRNTYV 159

Query: 108 NCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTNDRVDA-------------AHK 167
           +    +   ++    R     +AL +FY+     CKPT+   ++              H+
Sbjct: 160 SVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE 219

Query: 168 LFVEMSNKG-CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 194
           ++ EM N+G C PD +TY+ ++SS  K G+ D A  L    K
Sbjct: 220 VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMK 260

[Close]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 79/146 (54.11%), Postives = 108/146 (73.97%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIIN---PRDPNKQQLLQESDVLKRLKTDRNLSSV 60
           MYLKEG SLL+K+QKPLIPFVLN+N  +N      PN  + ++E DV+KRL+ +  +   
Sbjct: 1   MYLKEGCSLLLKVQKPLIPFVLNTNLNVNHLLTESPNHAE-IKELDVVKRLRQESCVPLA 60

Query: 61  LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIIN 120
           L FF +IANSN F+HT  T+ VMI +L  + ++D VQY+LQQMK+ G +C EDLFI +I+
Sbjct: 61  LHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVIS 120

Query: 121 GYKRVGSAEQALKMFYRIGEFGCKPT 144
            Y++VG AE+A++MFYRI EFGC P+
Sbjct: 121 VYRQVGLAERAVEMFYRIKEFGCDPS 145

[Close]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match: sp|Q9FNL2|PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 46/188 (24.47%), Postives = 83/188 (44.15%), Query Frame = 0 

Query: 42  SDVLKRLKTDRNLSSVLGFF-SAIAN-SNAFQHTASTYRVMIERLGRECEMDMVQYILQQ 101
           S V+K ++ ++++   +  F SA A  +N + H  S++  M+ RL    +    + ++ +
Sbjct: 17  SQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVR 76

Query: 102 MKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT---------------- 161
           MK++     ED+ + I  GY RV     +L++F+++ +F C P+                
Sbjct: 77  MKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQ 136

Query: 162 --------------------------------ND-RVDAAHKLFVEMSNKGCPPDAVTYT 179
                                           ND  VDA  K+F+EM  +GC PD+ TY 
Sbjct: 137 LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG 196

[Close]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-10
Identity = 47/202 (23.27%), Postives = 82/202 (40.59%), Query Frame = 0 

Query: 37  QLLQESDVLKRLKTDRNLSSVLGFF-SAIANSNAFQHTASTYRVMIERLGRECEMDMVQY 96
           ++L  S + + LK  +N  + L  F  A     ++ H  S Y  MI+ LG+   +  ++Y
Sbjct: 8   RVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKY 67

Query: 97  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCK-------------- 156
           ++++MK D   C + +F  +I  + R G  E A+ +F  + EF C               
Sbjct: 68  VIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMV 127

Query: 157 -------------------PTNDRV----------------DAAHKLFVEMSNKGCPPDA 189
                                N R+                D A ++F EM+ +GC PD 
Sbjct: 128 KESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDR 187

[Close]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match: sp|Q9LK58|PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 45/133 (33.83%), Postives = 62/133 (46.62%), Query Frame = 0 

Query: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQ-QMKMDGINCCEDLFICIINGYKRVGSA 126
           S +F+     Y   I RL    +   +  +LQ Q K D I   ED  I I+  Y   G A
Sbjct: 80  SESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIK-SEDFVIRIMLLYGYSGMA 139

Query: 127 EQALKMFYRIGEFGCKPT-------------NDRVDAAHKLFVEMSNK-GCPPDAVTYTT 185
           E A K+F  + E  C+ T             + ++D A K F E+  K G  PD VTY T
Sbjct: 140 EHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNT 199

[Close]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match: sp|Q9LW84|PP236_ARATH (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX=3702 GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 42/162 (25.93%), Postives = 73/162 (45.06%), Query Frame = 0 

Query: 48  LKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEM--DMVQYILQQMKMDGI 107
           L+ D  ++  + FF        FQH  STY  +I  L  E  +  +M + I + ++   +
Sbjct: 100 LEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCL-EEARLYGEMYRTIQEVVRNTYV 159

Query: 108 NCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTNDRVDA-------------AHK 167
           +    +   ++    R     +AL +FY+     CKPT+   ++              H+
Sbjct: 160 SVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE 219

Query: 168 LFVEMSNKG-CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 194
           ++ EM N+G C PD +TY+ ++SS  K G+ D A  L    K
Sbjct: 220 VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMK 260

[Close]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match: tr|A0A0A0KCK1|A0A0A0KCK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324890 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.2e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF
Sbjct: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK
Sbjct: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           RVGSAEQALKMFYRIGEFGCKPT
Sbjct: 121 RVGSAEQALKMFYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match: tr|A0A1S4E236|A0A1S4E236_CUCME (pentatricopeptide repeat-containing protein At3g48810 OS=Cucumis melo OX=3656 GN=LOC103497775 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSVLGF 60
           MYLKEG SLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSS LGF
Sbjct: 1   MYLKEGCSLLMKIQKPLIPFVLNSNPIINPRDPNKQQLLQESDVLKRLKTDRNLSSALGF 60

Query: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
           F+AIANSNAFQHTASTYRVMIE+LGRECEMD+VQYILQQMKMDGINCCEDLFICIINGYK
Sbjct: 61  FTAIANSNAFQHTASTYRVMIEKLGRECEMDVVQYILQQMKMDGINCCEDLFICIINGYK 120

Query: 121 RVGSAEQALKMFYRIGEFGCKPT 144
           RVGSAEQALK+FYRIGEFGCKPT
Sbjct: 121 RVGSAEQALKLFYRIGEFGCKPT 143

[Close]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match: tr|A0A2P5CV28|A0A2P5CV28_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120840 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 94/148 (63.51%), Postives = 118/148 (79.73%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRD-PN----KQQLLQESDVLKRLKTDRNLS 60
           MYLKEGRSLL+K+ KP IPFVL +NP+ NP D P+    K  +L ESDVLK+LK +R+++
Sbjct: 1   MYLKEGRSLLLKVHKPSIPFVLTTNPVPNPIDKPHFDSIKAAVLSESDVLKKLKRERDIT 60

Query: 61  SVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICI 120
           S + +F +IANS AF+HT  TY  M+E+LGRE  MD VQY+LQQMK++GI C E+LF+ +
Sbjct: 61  SAMEYFKSIANSGAFKHTPLTYEAMVEKLGRESHMDGVQYLLQQMKLEGIGCSEELFVRV 120

Query: 121 INGYKRVGSAEQALKMFYRIGEFGCKPT 144
           IN Y+RVGSAEQALKMFYRI EFGCKPT
Sbjct: 121 INSYRRVGSAEQALKMFYRISEFGCKPT 148

[Close]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match: tr|B9RZU8|B9RZU8_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1001660 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.8e-45
Identity = 93/148 (62.84%), Postives = 121/148 (81.76%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINP--RDPNKQQL---LQESDVLKRLKTDRNLS 60
           MYLKEG SLL+K+ KPLIPFVLN+NPI+NP  + P  Q++   ++ESDV+ RL+T+ ++ 
Sbjct: 1   MYLKEGCSLLLKVHKPLIPFVLNTNPILNPGNKPPEYQEIKTPIKESDVVMRLRTETDIV 60

Query: 61  SVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICI 120
               +F +IANS AFQHT  TY++MIE+LGREC++D VQY+LQQMK++GI+C EDLFI +
Sbjct: 61  LASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINV 120

Query: 121 INGYKRVGSAEQALKMFYRIGEFGCKPT 144
           IN Y+RVG AEQALKMFYRI EFGC+PT
Sbjct: 121 INTYRRVGLAEQALKMFYRIREFGCQPT 148

[Close]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match: tr|A0A2P5F5S2|A0A2P5F5S2_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_110460 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 1   MYLKEGRSLLMKIQKPLIPFVLNSNPIINPRD-PN----KQQLLQESDVLKRLKTDRNLS 60
           MYLKEGRSLL+K+ KP IPFVL +NP+ NP D P+    K  +L ESDVLK+LK +R+++
Sbjct: 1   MYLKEGRSLLLKVHKPSIPFVLTTNPVPNPIDKPHFDSIKAAVLSESDVLKKLKQERDIT 60

Query: 61  SVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICI 120
           S + +F +IANS AF+HT  TY  M+E+LGRE  MD VQY+LQQMK++GI C E+LF+ +
Sbjct: 61  SAMEYFKSIANSGAFKHTRLTYEAMVEKLGRESHMDGVQYLLQQMKLEGIGCSEELFVRV 120

Query: 121 INGYKRVGSAEQALKMFYRIGEFGCKPT 144
           +N Y RVGSAEQALKMFYRI EFGCKPT
Sbjct: 121 VNSYGRVGSAEQALKMFYRISEFGCKPT 148

The following BLAST results are available for this feature:
BLAST of CsaV3_6G028470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148797.11.9e-74100.00PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Cucumis sativu... [more]
XP_016902287.11.5e-7195.80PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Cucumis melo] ... [more]
XP_023000585.12.4e-6181.82pentatricopeptide repeat-containing protein At3g48810 isoform X1 [Cucurbita maxi... [more]
XP_023000588.12.4e-6181.82pentatricopeptide repeat-containing protein At3g48810 isoform X2 [Cucurbita maxi... [more]
XP_023513745.12.0e-6080.42pentatricopeptide repeat-containing protein At3g48810 [Cucurbita pepo subsp. pep... [more]
BLAST of CsaV3_6G028470 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48810.15.8e-3854.11Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G46100.12.1e-1124.47Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G05600.13.5e-1123.27Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G13150.16.0e-1133.83Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G16010.13.3e-0925.93Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of CsaV3_6G028470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M302|PP270_ARATH1.0e-3654.11Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX... [more]
sp|Q9FNL2|PP418_ARATH3.7e-1024.47Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
sp|Q9SYK1|PPR11_ARATH6.4e-1023.27Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX... [more]
sp|Q9LK58|PP225_ARATH1.1e-0933.83Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX... [more]
sp|Q9LW84|PP236_ARATH6.0e-0825.93Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_6G028470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCK1|A0A0A0KCK1_CUCSA1.2e-74100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324890 PE=4 SV=1[more]
tr|A0A1S4E236|A0A1S4E236_CUCME9.7e-7295.80pentatricopeptide repeat-containing protein At3g48810 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P5CV28|A0A2P5CV28_PARAD3.5e-4563.51Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|B9RZU8|B9RZU8_RICCO7.8e-4562.84Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398... [more]
tr|A0A2P5F5S2|A0A2P5F5S2_9ROSA1.3e-4462.84Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G028470.1CsaV3_6G028470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 96..143
e-value: 0.0032
score: 17.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 144..166
e-value: 8.6E-4
score: 17.3
coord: 113..143
e-value: 3.2E-4
score: 18.7
coord: 167..188
e-value: 6.4E-6
score: 24.0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 160..188
e-value: 2.8E-12
score: 46.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..164
score: 5.24
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 8.813
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..195
score: 9.558
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 145..212
e-value: 8.2E-16
score: 59.8
coord: 29..144
e-value: 1.5E-14
score: 55.7
NoneNo IPR availablePANTHERPTHR24015:SF269SUBFAMILY NOT NAMEDcoord: 2..143
coord: 144..198
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..143
coord: 144..198

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_6G028470CsaV3_UNG230140Cucumber (Chinese Long) v3cuccucB064
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G028470Silver-seed gourdcarcucB0087
CsaV3_6G028470Silver-seed gourdcarcucB0744
CsaV3_6G028470Cucumber (Gy14) v2cgybcucB298
CsaV3_6G028470Cucumber (Gy14) v1cgycucB374
CsaV3_6G028470Cucurbita maxima (Rimu)cmacucB0452
CsaV3_6G028470Cucurbita maxima (Rimu)cmacucB1078
CsaV3_6G028470Cucurbita moschata (Rifu)cmocucB0445
CsaV3_6G028470Cucurbita moschata (Rifu)cmocucB1059
CsaV3_6G028470Cucurbita pepo (Zucchini)cpecucB0178
CsaV3_6G028470Cucurbita pepo (Zucchini)cpecucB0409
CsaV3_6G028470Wild cucumber (PI 183967)cpicucB363
CsaV3_6G028470Bottle gourd (USVL1VR-Ls)cuclsiB427
CsaV3_6G028470Melon (DHL92) v3.5.1cucmeB452
CsaV3_6G028470Melon (DHL92) v3.6.1cucmedB443
CsaV3_6G028470Watermelon (Charleston Gray)cucwcgB500
CsaV3_6G028470Watermelon (97103) v1cucwmB568
CsaV3_6G028470Watermelon (97103) v2cucwmbB490
CsaV3_6G028470Wax gourdcucwgoB565