CsaV3_6G023990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G023990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NADH-ubiquinone oxidoreductase subunit
Location	chr6 : 15917595 .. 15917789 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

mRNA sequence

ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Coding sequence (CDS)

ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Protein sequence

MLGWATSNGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE

Homology

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BLAST of CsaV3_6G023990 vs. NCBI nr
Match: OTG11300.1 (putative niFe hydrogenase-like protein [Helianthus annuus])

HSP 1 Score: 68.6 bits (166), Expect = 9.2e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 27 RKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRG 62
          R   AHPTRGTEKLIEYKTYLQALPYSDRSEGD G
Sbjct: 4  RPASAHPTRGTEKLIEYKTYLQALPYSDRSEGDPG 38

[Close]

BLAST of CsaV3_6G023990 vs. NCBI nr
Match: AVL84864.1 (NADH dehydrogenase subunit 7 (mitochondrion) [Gastrodia elata])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTG-AHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L    +  G AHPTRGTEKLIEYKTYLQALPYSDRSE
Sbjct: 33 NGEVVERAEPHIGLLQCGTKPLGLAHPTRGTEKLIEYKTYLQALPYSDRSE 83

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BLAST of CsaV3_6G023990 vs. NCBI nr
Match: YP_009414450.1 (NADH dehydrogenase subunit 7 (mitochondrion) [Lagerstroemia indica] >AQS99569.1 NADH dehydrogenase subunit 7 (mitochondrion) [Lagerstroemia indica])

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-08
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLG-GSG----RKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          NG    R +PH+  L  G+G    R  GAHPTRGTEKLIEYKTYLQALPYSDR
Sbjct: 33 NGEVVERAEPHIGLLQCGTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDR 85

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BLAST of CsaV3_6G023990 vs. NCBI nr
Match: CBI31099.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRG 62
          NG    R +PH+  L            +GTEKLIEYKTYLQALPYSDRSEGDRG
Sbjct: 33 NGEVVERAEPHIGSL------------QGTEKLIEYKTYLQALPYSDRSEGDRG 74

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BLAST of CsaV3_6G023990 vs. NCBI nr
Match: CDM80240.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 16 DPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          +PH+  L G  R  GAHPTRGTEKLI+YKTYLQALPY DR
Sbjct: 41 EPHIGSLQGI-RPAGAHPTRGTEKLIKYKTYLQALPYFDR 79

[Close]

BLAST of CsaV3_6G023990 vs. TAIR10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-07
Identity = 28/50 (56.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPYSDRS+
Sbjct: 33 NGEVVERAEPHIGSL-----------HRGTEKLIEYKTYLQALPYSDRSD 71

[Close]

BLAST of CsaV3_6G023990 vs. Swiss-Prot
Match: sp|Q36450|NDUS2_NICSY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-07
Identity = 29/50 (58.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPYSDRSE
Sbjct: 33 NGEVVERAEPHIGLL-----------QRGTEKLIEYKTYLQALPYSDRSE 71

[Close]

BLAST of CsaV3_6G023990 vs. Swiss-Prot
Match: sp|P93306|NDUS2_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 6.5e-06
Identity = 27/50 (54.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPY DRS+
Sbjct: 33 NGEVVERAEPHIGLL-----------HRGTEKLIEYKTYLQALPYFDRSD 71

[Close]

BLAST of CsaV3_6G023990 vs. Swiss-Prot
Match: sp|Q37619|NDUS2_PROWI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 26/48 (54.17%), Postives = 27/48 (56.25%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          NG    R DPH+  L            RGTEKLIEYK YLQALPY DR
Sbjct: 37 NGEVVQRSDPHIGLL-----------HRGTEKLIEYKNYLQALPYFDR 73

[Close]

BLAST of CsaV3_6G023990 vs. Swiss-Prot
Match: sp|Q2RU37|NUOD_RHORT (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) OX=269796 GN=nuoD PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 14 RGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          R DPH+  L            RGTEKLIEYKTYLQALPY DR
Sbjct: 37 RADPHIGLL-----------HRGTEKLIEYKTYLQALPYFDR 67

[Close]

BLAST of CsaV3_6G023990 vs. Swiss-Prot
Match: sp|Q9TC96|NDUS2_NEPOL (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea OX=31312 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-05
Identity = 26/48 (54.17%), Postives = 27/48 (56.25%), Query Frame = 0


Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          NG    R DPH+  L            RGTEKLIEYKTY QALPY DR
Sbjct: 37 NGEVVARADPHIGLL-----------HRGTEKLIEYKTYTQALPYFDR 73

[Close]

BLAST of CsaV3_6G023990 vs. TrEMBL
Match: tr|K4AWI1|K4AWI1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRK-TGAHPTRGTEKLIEYKTYLQALPYSDRSEGD 60
          MLGWATSNGVSRM GD HVRFLGGSGRK  GAHPTRGTEKLIEYKTYLQALPY DR EGD
Sbjct: 1  MLGWATSNGVSRMLGDLHVRFLGGSGRKLAGAHPTRGTEKLIEYKTYLQALPYFDRLEGD 60

Query: 61 RGVTE 65
            VTE
Sbjct: 61 HEVTE 65

[Close]

BLAST of CsaV3_6G023990 vs. TrEMBL
Match: tr|K4DEB8|K4DEB8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRK-TGAHPTRGTEKLIEYKTYLQALPYSDRSEGD 60
          MLGWATSN VSRMRGDPHVR LG   +K    HPTRGT+KLIEYKTYL +L YSD  EGD
Sbjct: 1  MLGWATSNRVSRMRGDPHVRSLGDLVKKPADTHPTRGTKKLIEYKTYLVSLYYSDHLEGD 60

Query: 61 RGVT 64
          RGVT
Sbjct: 61 RGVT 64

[Close]

BLAST of CsaV3_6G023990 vs. TrEMBL
Match: tr|A0A0E0DVR6|A0A0E0DVR6_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 27 RKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
          R  GAHPTRGTEKLIEYKTYLQALPY DRSEGDRGVTE
Sbjct: 52 RPAGAHPTRGTEKLIEYKTYLQALPYFDRSEGDRGVTE 89

[Close]

BLAST of CsaV3_6G023990 vs. TrEMBL
Match: tr|A0A0E0RI13|A0A0E0RI13_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-10
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 27 RKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRG 62
          R  GAHPTRGTEKLIEYKTYLQALPY DRSEGDRG
Sbjct: 27 RPAGAHPTRGTEKLIEYKTYLQALPYFDRSEGDRG 61

[Close]

BLAST of CsaV3_6G023990 vs. TrEMBL
Match: tr|A0A251TJN3|A0A251TJN3_HELAN (Putative niFe hydrogenase-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0297201 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 27 RKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRG 62
          R   AHPTRGTEKLIEYKTYLQALPYSDRSEGD G
Sbjct: 4  RPASAHPTRGTEKLIEYKTYLQALPYSDRSEGDPG 38

The following BLAST results are available for this feature:

BLAST of CsaV3_6G023990 vs. NCBI nr


Match Name	E-value	Identity	Description
OTG11300.1	9.2e-09	88.57	putative niFe hydrogenase-like protein [Helianthus annuus]	[more]
AVL84864.1	3.5e-08	66.67	NADH dehydrogenase subunit 7 (mitochondrion) [Gastrodia elata]	[more]
YP_009414450.1	6.0e-08	66.04	NADH dehydrogenase subunit 7 (mitochondrion) [Lagerstroemia indica] >AQS99569.1 ...	[more]
CBI31099.3	1.5e-06	59.26	unnamed protein product, partial [Vitis vinifera]	[more]
CDM80240.1	1.9e-06	72.50	unnamed protein product [Triticum aestivum]	[more]

BLAST of CsaV3_6G023990 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00510.1	1.2e-07	56.00	NADH dehydrogenase subunit 7	[more]

BLAST of CsaV3_6G023990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q36450\|NDUS2_NICSY	4.5e-07	58.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
sp\|P93306\|NDUS2_ARATH	6.5e-06	54.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
sp\|Q37619\|NDUS2_PROWI	2.5e-05	54.17	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 ...	[more]
sp\|Q2RU37\|NUOD_RHORT	2.5e-05	59.52	NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 1117...	[more]
sp\|Q9TC96\|NDUS2_NEPOL	3.2e-05	54.17	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea O...	[more]

BLAST of CsaV3_6G023990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|K4AWI1\|K4AWI1_SOLLC	4.3e-23	87.69	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|K4DEB8\|K4DEB8_SOLLC	2.7e-17	75.00	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|A0A0E0DVR6\|A0A0E0DVR6_9ORYZ	1.7e-11	92.11	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
tr\|A0A0E0RI13\|A0A0E0RI13_ORYRU	9.4e-10	91.43	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	[more]
tr\|A0A251TJN3\|A0A251TJN3_HELAN	6.1e-09	88.57	Putative niFe hydrogenase-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029014	NiFe-Hase_large

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G023990.1	CsaV3_6G023990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	SSF56762	HydB/Nqo4-like	coord: 33..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G023990	CsGy6G017050	Cucumber (Gy14) v2	cgybcucB301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G023990	Watermelon (97103) v2	cucwmbB488
CsaV3_6G023990	Wax gourd	cucwgoB553
CsaV3_6G023990	Cucumber (Chinese Long) v3	cuccucB108
CsaV3_6G023990	Silver-seed gourd	carcucB0086
CsaV3_6G023990	Silver-seed gourd	carcucB0742
CsaV3_6G023990	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G023990	Cucumber (Gy14) v1	cgycucB067
CsaV3_6G023990	Cucurbita maxima (Rimu)	cmacucB0450
CsaV3_6G023990	Cucurbita maxima (Rimu)	cmacucB1074
CsaV3_6G023990	Cucurbita moschata (Rifu)	cmocucB0443
CsaV3_6G023990	Cucurbita moschata (Rifu)	cmocucB1056
CsaV3_6G023990	Cucurbita pepo (Zucchini)	cpecucB0175
CsaV3_6G023990	Cucurbita pepo (Zucchini)	cpecucB0404
CsaV3_6G023990	Bottle gourd (USVL1VR-Ls)	cuclsiB425
CsaV3_6G023990	Melon (DHL92) v3.5.1	cucmeB447
CsaV3_6G023990	Melon (DHL92) v3.6.1	cucmedB439
CsaV3_6G023990	Watermelon (Charleston Gray)	cucwcgB494
CsaV3_6G023990	Watermelon (Charleston Gray)	cucwcgB498
CsaV3_6G023990	Watermelon (97103) v1	cucwmB522
CsaV3_6G023990	Watermelon (97103) v1	cucwmB563