CsaV3_6G023770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G023770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUbiquitin-protein ligase, putative
Locationchr6 : 15756312 .. 15758224 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACGACAGCAAAGTTCTCATTTTTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGACATGTTCAATGAGCTTGAATTCCAGGTATCACTGGCTCACTGAGATAGTAACGTGGTTTGCATGAAAAGGCTGGTTTGCTGTTATATAATCTCTTGATGACTCGTTTATCATTGCACATCAACTGCCTCATGTGCCTTGAATCCTATTTCATGCTAGTATTAATTATACTATTTGGGAAAGAAGTATGTTAAAGGAGGAACATTTTTTCTCCTAGACCATACGAAGTCAGTAGGGTTAAGCACTTAGATTTGCATTTTTATTCTTCTTTTTGTGTGGGTGTGTGGGTGTGTGGGTGGGGGAGGGGGAGGGGGGAGGAGGTTAGTAGTTTTGATAATGTGCCATTGTCGACCTTTAATTTTCATGTGACGTGAAACACTAAACTAATTAAAGCAAGAACCTAGAATGATTAGGAGTACACTTGATCTTGTGATCTGGGCAGCAACTAACCAAAGCCTAAACCCTAGAGGAATAAGGGTCTTCCTTATTGAGTTCACCTGAAGGAATAGATGTGGGTTTCCTTGATGATGTGAAGATTCAGGTTCAGGATAAGGAAACTAGTCTTCCTTAAGATTCAAGTTGTTCATTTTCGAAGAGGCATAATGCTCGTAAAAGTGTAGAGGCAGAATTTTACTAATCATTAAAATCTGAGAAATAAACGAAGTGAACTAGATTGTTTTTAGCCTTACATGGACTCTAAGTGGTGACAACTGAAGTCCTTGTAAGGGGAAAAGATGTGGGAAAAAAAATTCCCTTGCGATGGGAAATGATAAGAAAAACATAAAGAGAACCCTAATTTAGGTCAAATCATGGACCAATGGCTAAATACTGATGGAGGTTTTGTTGCTAGTCTTTTGTGGTTCCAAGATAAATCGAGTTGCTGTCTTTGACTGGTCTATTTCATTTCAGCTTTTAATATCAGGTTCATAGGGTAAGTTCTATTAAACCCTTTTTTCTACATATGTATTTTCTTTTCTTTTCTTTTCTTTTCTGCATAATTTTTTTGCATATTGTGTTCGATAAAATTTTGAAAATTTGAAATCTTGCAAGAAGATTAGTTACAATTAATCTTCCTTTGGAGGTTGAACAATTCTTGGTTTAGGATATCGAATACTAGATTTATTGTAGTGCAATCGGAATTGTGATGTCAAGTCAATTAAATTTCATAATTGTAGATGATGTTGGAGGATCTCACCCGGGTAATTGGGAGATGGTTTTGAAGTCTTTGGAGCTTAGGGAGTTGGTCATCGTTTAGATTCTTTTTAATATTTTTCAATTAATTTCGAATTCTTACAATGTGTATGCCTGTATTTGTGTTTGAAACTGGGGGATAAATTGATTACCATTATTCAGACTTCTAGTCCTCTCTTATGTTTCTATGACTATGAAAACAAACTTTGGACTTGTATTGTTTGTAATGCCCTGTTTGGTCAGGCACAACCATGATCAAGAAATTTGTGATAGGAAACTGAGAAACATCTTCACTTTTTTAATCATGTTCTTTTATGCTTTTGAAATGTGGGAACATCGAAATTTGAATTTTTATTTCATGCTTTCAGGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCCGTGGAAAACCAAAAGAAATTTCTGAAGTGAGTATTTTCATTACACATCAGTTGGTCATTACTTCTTGTCTCAAGTTGGCTTAGAGAAAAACTGAACTTCAGAAATATAACAATTGGATCTTGCTTTTTCATTAGGTTTGTAACTGGTTGCTCTCGAGGACCTCTTCTTGGCCTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGAAATTGGTGTTTTGTTCATTTTTCTCCATTTCCTGG

mRNA sequence

ATACGACAGCAAAGTTCTCATTTTTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGACATGTTCAATGAGCTTGAATTCCAGGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCCGTGGAAAACCAAAAGAAATTTCTGAAGTTTGTAACTGGTTGCTCTCGAGGACCTCTTCTTGGCCTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGAAATTGGTGTTTTGTTCATTTTTCTCCATTTCCTGG

Coding sequence (CDS)

ATACGACAGCAAAGTTCTCATTTTTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGACATGTTCAATGAGCTTGAATTCCAGGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCCGTGGAAAACCAAAAGAAATTTCTGAAGTTTGTAACTGGTTGCTCTCGAGGACCTCTTCTTGGCCTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGAAATTGGTGTTTTGTTCATTTTTCTCCATTTCCTGG

Protein sequence

IRQQSSHFLRGFQQLIQKEWIDMFNELEFQEHYVIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQRKLVFCSFFSISW
Homology
[Close]
BLAST of CsaV3_6G023770 vs. NCBI nr
Match: XP_008458320.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 77/106 (72.64%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 877 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSLDVDDLRTHTTYSSGYHREHY 936

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLG KYLEPCFCIQR
Sbjct: 937 VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGFKYLEPCFCIQR 982

[Close]
BLAST of CsaV3_6G023770 vs. NCBI nr
Match: XP_022958808.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/106 (70.75%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 877 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHY 936

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSV NQKKFLKFVTGCSRGPLLG +YLEPCFCIQR
Sbjct: 937 VIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQR 982

[Close]
BLAST of CsaV3_6G023770 vs. NCBI nr
Match: XP_022958809.1 (E3 ubiquitin-protein ligase UPL6 isoform X2 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/106 (70.75%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 809 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHY 868

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSV NQKKFLKFVTGCSRGPLLG +YLEPCFCIQR
Sbjct: 869 VIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQR 914

[Close]
BLAST of CsaV3_6G023770 vs. NCBI nr
Match: XP_023006490.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/106 (70.75%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 877 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHY 936

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSV NQKKFLKFVTGCSRGPLLG +YLEPCFCIQR
Sbjct: 937 VIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQR 982

[Close]
BLAST of CsaV3_6G023770 vs. NCBI nr
Match: XP_023006491.1 (E3 ubiquitin-protein ligase UPL6 isoform X2 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/106 (70.75%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 809 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHY 868

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSV NQKKFLKFVTGCSRGPLLG +YLEPCFCIQR
Sbjct: 869 VIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQR 914

[Close]
BLAST of CsaV3_6G023770 vs. TAIR10
Match: AT3G17205.1 (ubiquitin protein ligase 6)

HSP 1 Score: 133.3 bits (334), Expect = 7.7e-32
Identity = 70/106 (66.04%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLI KEWIDMFNE E Q                            HY
Sbjct: 873 IRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHY 932

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VI+MFWEV+KSFS ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 933 VIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR 978

[Close]
BLAST of CsaV3_6G023770 vs. TAIR10
Match: AT3G53090.1 (ubiquitin-protein ligase 7)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 36/102 (35.29%), Postives = 46/102 (45.10%), Query Frame = 0 

Query: 5    SSHFLRGFQQLIQKEWIDMFNELEFQE---------------------------HYVIEM 64
            S+ F RG   LI   W+ +FN  EF +                              I++
Sbjct: 984  SNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKI 1043

Query: 65   FWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
            FWEV+K F    +   LKFVT CSR PLLG KYL+P F I +
Sbjct: 1044 FWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHK 1085

[Close]
BLAST of CsaV3_6G023770 vs. TAIR10
Match: AT1G55860.1 (ubiquitin-protein ligase 1)

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0 

Query: 1    IRQQSSHFLRGFQQLIQKEWIDMFN------------ELEFQE-------------HYVI 60
            IR Q + FL GF +LI +E + +FN            E++F +               VI
Sbjct: 3775 IRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVI 3834

Query: 61   EMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLE 73
              FWEV+K+FS E+  +FL+FVTG S+ PL G K L+
Sbjct: 3835 HWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQ 3871

[Close]
BLAST of CsaV3_6G023770 vs. TAIR10
Match: AT1G70320.1 (ubiquitin-protein ligase 2)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-08
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 0 

Query: 1    IRQQSSHFLRGFQQLIQKEWIDMFN------------ELEFQE-------------HYVI 60
            IR Q + FL G  +LI +E + +FN            E++F +               VI
Sbjct: 3503 IRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVI 3562

Query: 61   EMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLE 73
              FWEV+K+FS E+  +FL+FVTG S+ PL G K L+
Sbjct: 3563 RWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQ 3599

[Close]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match: sp|Q8RWB8|UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-30
Identity = 70/106 (66.04%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLI KEWIDMFNE E Q                            HY
Sbjct: 873 IRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHY 932

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VI+MFWEV+KSFS ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 933 VIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR 978

[Close]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match: sp|Q15386|UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens OX=9606 GN=UBE3C PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 5.5e-11
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 0 

Query: 1    IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
            IRQ    F +G   ++  EW+ MF++ E Q                           +H 
Sbjct: 932  IRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHP 991

Query: 61   VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCI 78
            VI++FW V++ F+ E ++K LKFVT CSR PLLG K L P FCI
Sbjct: 992  VIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI 1035

[Close]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match: sp|Q80U95|UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus OX=10090 GN=Ube3c PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0 

Query: 1    IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
            IR     F +G   ++  EW+ MF++ E Q                           +H 
Sbjct: 932  IRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHP 991

Query: 61   VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCI 78
            VI++FW V++ F+ E ++K LKFVT CSR PLLG K L P FCI
Sbjct: 992  VIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI 1035

[Close]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match: sp|Q9SCQ2|UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-09
Identity = 36/102 (35.29%), Postives = 46/102 (45.10%), Query Frame = 0 

Query: 5    SSHFLRGFQQLIQKEWIDMFNELEFQE---------------------------HYVIEM 64
            S+ F RG   LI   W+ +FN  EF +                              I++
Sbjct: 984  SNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKI 1043

Query: 65   FWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
            FWEV+K F    +   LKFVT CSR PLLG KYL+P F I +
Sbjct: 1044 FWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHK 1085

[Close]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match: sp|Q1K9C4|YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-09
Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ----------------EHYV---------- 60
           + +Q   F  GF Q+I   W+ MF+E E Q                 H V          
Sbjct: 878 LSRQCRAFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSP 937

Query: 61  -IEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQ 79
            I +FWEV++ F  E+++ F+KFVT  +R P+LG K L P FCI+
Sbjct: 938 TIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCIR 982

[Close]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match: tr|A0A1S3C746|A0A1S3C746_CUCME (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN=LOC103497770 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 77/106 (72.64%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQKEWIDMFNE EFQ                           EHY
Sbjct: 877 IRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSLDVDDLRTHTTYSSGYHREHY 936

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLG KYLEPCFCIQR
Sbjct: 937 VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGFKYLEPCFCIQR 982

[Close]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match: tr|A0A067G0Y7|A0A067G0Y7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0016881mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQK+WIDMFNE E Q                           EHY
Sbjct: 102 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHY 161

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEV+KSFS+ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 162 VIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQR 207

[Close]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match: tr|V4RXS5|V4RXS5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004231mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQK+WIDMFNE E Q                           EHY
Sbjct: 872 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHY 931

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEV+KSFS+ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 932 VIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQR 977

[Close]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match: tr|A0A2H5N5X2|A0A2H5N5X2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_017390 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQK+WIDMFNE E Q                           EHY
Sbjct: 873 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHY 932

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEV+KSFS+ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 933 VIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQR 978

[Close]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match: tr|A0A2P4M4U7|A0A2P4M4U7_QUESU (E3 ubiquitin-protein ligase upl6 OS=Quercus suber OX=58331 GN=CFP56_44847 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 1   IRQQSSHFLRGFQQLIQKEWIDMFNELEFQ---------------------------EHY 60
           IRQQSSHFLRGFQQLIQK+WIDMFNE E Q                           EHY
Sbjct: 878 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLESLDVDDLRLHTNYAGGYHKEHY 937

Query: 61  VIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGLKYLEPCFCIQR 80
           VIEMFWEV+KSFS+ENQKKFLKFVTGCSRGPLLG KYLEP FCIQR
Sbjct: 938 VIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQR 983

The following BLAST results are available for this feature:
BLAST of CsaV3_6G023770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458320.11.7e-3272.64PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo][more]
XP_022958808.12.4e-3170.75E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata][more]
XP_022958809.12.4e-3170.75E3 ubiquitin-protein ligase UPL6 isoform X2 [Cucurbita moschata][more]
XP_023006490.12.4e-3170.75E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita maxima][more]
XP_023006491.12.4e-3170.75E3 ubiquitin-protein ligase UPL6 isoform X2 [Cucurbita maxima][more]
BLAST of CsaV3_6G023770 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17205.17.7e-3266.04ubiquitin protein ligase 6[more]
AT3G53090.11.7e-1035.29ubiquitin-protein ligase 7[more]
AT1G55860.15.4e-0937.11ubiquitin-protein ligase 1[more]
AT1G70320.12.7e-0836.08ubiquitin-protein ligase 2[more]
BLAST of CsaV3_6G023770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RWB8|UPL6_ARATH1.4e-3066.04E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV... [more]
sp|Q15386|UBE3C_HUMAN5.5e-1136.54Ubiquitin-protein ligase E3C OS=Homo sapiens OX=9606 GN=UBE3C PE=1 SV=3[more]
sp|Q80U95|UBE3C_MOUSE2.7e-1035.58Ubiquitin-protein ligase E3C OS=Mus musculus OX=10090 GN=Ube3c PE=1 SV=2[more]
sp|Q9SCQ2|UPL7_ARATH3.0e-0935.29E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV... [more]
sp|Q1K9C4|YFK7_SCHPO6.7e-0934.29Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (stra... [more]
BLAST of CsaV3_6G023770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C746|A0A1S3C746_CUCME1.1e-3272.64LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A067G0Y7|A0A067G0Y7_CITSI6.7e-3067.92Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0016881... [more]
tr|V4RXS5|V4RXS5_9ROSI6.7e-3067.92Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004231mg PE=4 ... [more]
tr|A0A2H5N5X2|A0A2H5N5X2_CITUN6.7e-3067.92Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_017390 PE=4 SV=1[more]
tr|A0A2P4M4U7|A0A2P4M4U7_QUESU6.7e-3067.92E3 ubiquitin-protein ligase upl6 OS=Quercus suber OX=58331 GN=CFP56_44847 PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR035983Hect_E3_ubiquitin_ligase
IPR000569HECT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G023770.1CsaV3_6G023770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000569HECT domainPFAMPF00632HECTcoord: 30..80
e-value: 9.6E-16
score: 58.0
IPR000569HECT domainPROSITEPS50237HECTcoord: 30..73
score: 13.941
NoneNo IPR availableGENE3DG3DSA:3.30.2410.10coord: 21..86
e-value: 4.1E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 30..81
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 1..30
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 1..30
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 30..81
IPR035983HECT, E3 ligase catalytic domainSUPERFAMILYSSF56204Hect, E3 ligase catalytic domaincoord: 1..82

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G023770Cucumber (Chinese Long) v3cuccucB148
CsaV3_6G023770Cucumber (Chinese Long) v3cuccucB184
CsaV3_6G023770Silver-seed gourdcarcucB0086
CsaV3_6G023770Silver-seed gourdcarcucB0310
CsaV3_6G023770Silver-seed gourdcarcucB0742
CsaV3_6G023770Cucumber (Gy14) v2cgybcucB149
CsaV3_6G023770Cucumber (Gy14) v2cgybcucB298
CsaV3_6G023770Cucumber (Gy14) v2cgybcucB301
CsaV3_6G023770Cucumber (Gy14) v1cgycucB067
CsaV3_6G023770Cucumber (Gy14) v1cgycucB396
CsaV3_6G023770Cucurbita maxima (Rimu)cmacucB0311
CsaV3_6G023770Cucurbita maxima (Rimu)cmacucB0450
CsaV3_6G023770Cucurbita maxima (Rimu)cmacucB1001
CsaV3_6G023770Cucurbita maxima (Rimu)cmacucB1074
CsaV3_6G023770Cucurbita moschata (Rifu)cmocucB0304
CsaV3_6G023770Cucurbita moschata (Rifu)cmocucB0443
CsaV3_6G023770Cucurbita moschata (Rifu)cmocucB1056
CsaV3_6G023770Cucurbita pepo (Zucchini)cpecucB0175
CsaV3_6G023770Cucurbita pepo (Zucchini)cpecucB0404
CsaV3_6G023770Cucurbita pepo (Zucchini)cpecucB0780
CsaV3_6G023770Wild cucumber (PI 183967)cpicucB185
CsaV3_6G023770Wild cucumber (PI 183967)cpicucB365
CsaV3_6G023770Bottle gourd (USVL1VR-Ls)cuclsiB425
CsaV3_6G023770Bottle gourd (USVL1VR-Ls)cuclsiB492
CsaV3_6G023770Melon (DHL92) v3.5.1cucmeB447
CsaV3_6G023770Melon (DHL92) v3.5.1cucmeB509
CsaV3_6G023770Melon (DHL92) v3.6.1cucmedB439
CsaV3_6G023770Melon (DHL92) v3.6.1cucmedB497
CsaV3_6G023770Watermelon (Charleston Gray)cucwcgB494
CsaV3_6G023770Watermelon (Charleston Gray)cucwcgB498
CsaV3_6G023770Watermelon (97103) v1cucwmB522
CsaV3_6G023770Watermelon (97103) v1cucwmB563
CsaV3_6G023770Watermelon (97103) v2cucwmbB483
CsaV3_6G023770Watermelon (97103) v2cucwmbB488
CsaV3_6G023770Wax gourdcucwgoB553
CsaV3_6G023770Wax gourdcucwgoB576