CsaV3_6G022520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G022520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 15467299 .. 15467517 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

mRNA sequence

ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

Coding sequence (CDS)

ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGTAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

Protein sequence

MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSILRSHIHSSRLSK
Homology
[Close]
BLAST of CsaV3_6G022520 vs. NCBI nr
Match: KGN47396.1 (hypothetical protein Csa_6G311010 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.6e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
          MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI
Sbjct: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60

Query: 61 LRSHIHSSRLSK 73
          LRSHIHSSRLSK
Sbjct: 61 LRSHIHSSRLSK 72

[Close]
BLAST of CsaV3_6G022520 vs. TrEMBL
Match: tr|A0A0A0KHZ7|A0A0A0KHZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
          MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI
Sbjct: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60

Query: 61 LRSHIHSSRLSK 73
          LRSHIHSSRLSK
Sbjct: 61 LRSHIHSSRLSK 72

The following BLAST results are available for this feature:
BLAST of CsaV3_6G022520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47396.15.6e-31100.00hypothetical protein Csa_6G311010 [Cucumis sativus][more]
BLAST of CsaV3_6G022520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G022520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G022520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHZ7|A0A0A0KHZ7_CUCSA3.7e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G022520.1CsaV3_6G022520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G022520ClCG06G004740Watermelon (Charleston Gray)cucwcgB498
CsaV3_6G022520MELO3C021283.2Melon (DHL92) v3.6.1cucmedB439
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G022520Cucumber (Chinese Long) v3cuccucB148
CsaV3_6G022520Cucumber (Chinese Long) v3cuccucB184
CsaV3_6G022520Silver-seed gourdcarcucB0085
CsaV3_6G022520Silver-seed gourdcarcucB0086
CsaV3_6G022520Silver-seed gourdcarcucB0310
CsaV3_6G022520Silver-seed gourdcarcucB0742
CsaV3_6G022520Cucumber (Gy14) v2cgybcucB149
CsaV3_6G022520Cucumber (Gy14) v2cgybcucB298
CsaV3_6G022520Cucumber (Gy14) v1cgycucB396
CsaV3_6G022520Cucumber (Gy14) v1cgycucB505
CsaV3_6G022520Cucurbita maxima (Rimu)cmacucB0311
CsaV3_6G022520Cucurbita maxima (Rimu)cmacucB0450
CsaV3_6G022520Cucurbita maxima (Rimu)cmacucB1001
CsaV3_6G022520Cucurbita maxima (Rimu)cmacucB1074
CsaV3_6G022520Cucurbita moschata (Rifu)cmocucB0304
CsaV3_6G022520Cucurbita moschata (Rifu)cmocucB0442
CsaV3_6G022520Cucurbita moschata (Rifu)cmocucB0443
CsaV3_6G022520Cucurbita moschata (Rifu)cmocucB1056
CsaV3_6G022520Cucurbita pepo (Zucchini)cpecucB0175
CsaV3_6G022520Cucurbita pepo (Zucchini)cpecucB0402
CsaV3_6G022520Cucurbita pepo (Zucchini)cpecucB0404
CsaV3_6G022520Cucurbita pepo (Zucchini)cpecucB0780
CsaV3_6G022520Wild cucumber (PI 183967)cpicucB185
CsaV3_6G022520Wild cucumber (PI 183967)cpicucB365
CsaV3_6G022520Bottle gourd (USVL1VR-Ls)cuclsiB425
CsaV3_6G022520Bottle gourd (USVL1VR-Ls)cuclsiB471
CsaV3_6G022520Bottle gourd (USVL1VR-Ls)cuclsiB492
CsaV3_6G022520Melon (DHL92) v3.5.1cucmeB447
CsaV3_6G022520Melon (DHL92) v3.5.1cucmeB471
CsaV3_6G022520Melon (DHL92) v3.5.1cucmeB509
CsaV3_6G022520Melon (DHL92) v3.6.1cucmedB461
CsaV3_6G022520Melon (DHL92) v3.6.1cucmedB497
CsaV3_6G022520Watermelon (Charleston Gray)cucwcgB494
CsaV3_6G022520Watermelon (Charleston Gray)cucwcgB439
CsaV3_6G022520Watermelon (97103) v1cucwmB522
CsaV3_6G022520Watermelon (97103) v1cucwmB563
CsaV3_6G022520Watermelon (97103) v2cucwmbB483
CsaV3_6G022520Watermelon (97103) v2cucwmbB488
CsaV3_6G022520Wax gourdcucwgoB564
CsaV3_6G022520Wax gourdcucwgoB576