CsaV3_6G022450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G022450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L29
Locationchr6 : 15377283 .. 15386198 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAGTCCCACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGGTATGCGATTTTCTCTTACAATCACTTCTGCTCTTGTTGAATCCATTGTGTTTTCTTTTTAATTTGTTTTAATTCTCGTGGATTTGTGTATAGATGGACCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATACCAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTAAAGTAGCCTCCGCCAAGTTTAGGGTTTTTATTATTCAAATCTTTTGTTATTGCTCTTATTTTTGTTCAGTAGTCTTGATATTTGACTCAATTTGGAGACTTTTGCGTCTGAGGCATGTTTTACGAAAATACATTATCTGATTTGCAATTTTAAAGGTTCTACTGTTGATTACATCTTCATACCTTATGAACTTGTTTAATGATGGGTTTAATTGCAACTTCATTTTCCATCATTGAATTTTCAAGTTTAGTGACCAAATTCACGAACTTGAACGACTTGAAATTTGACACAATGTTTTCAATGGTGTAAATTTTGCTACAAAGCATGTTATAATGGGATGTGGTCTTTGATTTATTGGACAACAAGCTTCATATAAATCAAGCAAACTAGTATAAACCTTTTATCATGAGTTGGTCCCAGTGGGCAATGGCTTTGATATTGGATTGTGGGTTCTTTGGTAGCCATCAGTTGCCTGGGAGTTTCAAATGTGGTAGGATCATCCGGTTCTCATTAAGATATTATATAAAAAAAATAGAGTTTCGTAAGTTCGACTCGTAGATGTTTGGATGGAGCATAATCTGAGGCACTGCCCCATGGTTCGTGATGGATGAGCTGCAAAGGCCATCTTGTAAAGTAATTTCCGCCGATCAGATGCAACTGGACAGGGTATTGGACCTTACTGCCACTTCCAGTATGTTCCACTAAGATTCAGTTTGTGATTCAACCCTCTAGGAAAGAAAGATGTTTGGATGCAACTATTAGAGCTGTCTGTCGATGTTTGGATGAAACTTCCTAGGTGCAAGGGCATGAGACACTCAGTTCCATTTAAAACTGTAAAATTCGGTGGAAGCCGGAAAGGAAGGAGAAGGCCAAAGGCGACAAAGGTGGTACCAGTGGAGATGAAAATAAGTTCTTAGTCCCTAAACTCTGCTAAATTACAATTTATTCTCTAGATTTATTAGATTTAGTATTTGTAATTTAAAATTGAAATGTTTTAAAAATAGAATAAATTGTCAAATTATTTAAGAAGAAAACCATGCAAAATTTATTTACAATAAAATTGTAAATATTTTGTCTACTGTTCTTGTGTTTTACAATCTTTGAAAAATTGGTAACGATTTAGTTTTTTAGTTTTCTAGGCTTTTTCTTTATAAAGGTGGACAGAAAAAAGTTTTGGTTTTAATTTTGCAATTTCAAATCACAAAATCAAAAATTACGAAAAGTCTAATTTTACATTTGCAATGCACTCCTTTTATAAACAAACTACAGGCAAAAACTGCATGTAGTGAGCTTCCATTCTCCACACTTGGAATATCACAAAGTGGGTGTCTCCCATGCATGAAGCCATTTGTTAATTACATGCAATGTTCTTCCAAGGGTAATATAGTAATTTGACATTTTAAAAGCCAAACATCAACATTTTTACTTTTTACCATTTTATCCGTCTTGACTAATTTTGACCTCTCGAGTATGAATCCGTATTTATTTTTCTAAATTTCAAATTATATTTGAATATAAAGTCGGTTAAAGTTTGAATTTTCAAAGTCAAAAGTCAATATTTTGACTTTTTACTTTTTTTGACATTTTTCATCAATTTTGAGCTTCCAAATATGAATTCATATTCATATTTTTAATATTTAAATCACATTTAAACATGAAGCTATATCTTAAATTATAACTAACTACTATATTAAATATATTCGTCGATTTATCTCTCTTTACCTAATTTGAACAATTCAAATTATTTCATCATAATGTTTTAAGTTGATTCCTTATGAGCTAGTGGGAGAACCTAATGGACCTATAGATCATGAGCTCCAATGATCCGAGATTAACTCTCTAAACTCTTTAGTCTGAGTTAATCAACCTTCATTAAATAACAGGTTATTTCACTAAAGTTTCGTAGTTGCACTCTCCTCATTATAGATATACATGTGTATTTTTTTTTCTTTATATCGACTATTAGTTGCAAAGTGGCCTGAATACCAAGAATGTATTAAAGAGAATCGACCGTTTCACTGGAAGGAGGAGTATCGGTTGGTTGACTATGTTGTCGGATCAAAACAAGACTTTCAAGATCCTTGAGCGAATGTTGATTACATTTACTCTCCATTCAATATCCATGGAAATCATTGGGTTCTATTATGCTTGGACTTGGTAAGTTGTCAAGTCAAGGTATGAGATTCGCTTCTGTCGCTTTCGAGTGTTGAAGATATGAGAAGCATATTAATCTCGATTCCAGAGATGGTGCCAAATTTGCTAGATACTACTGGATTCTTTGCTATCAACACACAAGGAACCTTAGCTACTTGTCATTGTTGACTCCATTCCACTGCAACGCAACAATAGTGATTGTGGTGTATTTATCATTAAGTATTTCGAATACGAAACTTCTGGTTTAGATGTAGCTACATTATGTCAAGAAAACATGTCCTACTTTAGAAAACAATTGGCATTTCAATTATGGACCTACACTTCTATGTATTGACTTATAGTTGCAAATTTTGAAGGAATTGTATTTCGTATATGTTGCGAACTATGTACATAAATAGATTTATGTAATGGAATGAATACCGTTGTTATTTTATGGTCTGAAATTTTTATTTTATTCTTTTGGAAAAAATTTCAATAAAAATTTCAAGTGTGCAGTATGTACAATCCCATAAACATCATTTGAGATGTGGTTATCTTGCATTTTGATAATATGAAGACTATACAAGTGATTTGTTTTTTGCAGGAGCTACTGCTATGGATTCTAGAAGCAAAACTTTAGAGATTCTGAGTTTGGTTAGAGAAAGAAATGGAATCAACCATAATTAATTTAGGTGTTGAAGTGAGAGAGATATAATTAAAAATCTGGTACTCTAATTATCAGAGATCTGGATGTCTTTTTTGGATCCGTTTGTTTTTTACTTTGGCTGAAGAATCATTTTGCCAGCTTGTTGTGTGATTAAGTGGTAGGAAGTAGGCACAATGCTGATCAATTTCCCTTGCTCAATTTCCCTTGTAAGTTCTTGCTACTTTTCCTTCATCATAAATTATGTCAAGTTTGTTCATTATAATATAATGCAAGTGTCCATTCATTATGTAGTTAACTTCTCTGAATTTTTATTTGTCCATGATTGGTAATAGAAATTGATGCCATGGTTCCTTGCACTTTTACATTTTTTTTATTCAAGATCATCTTTTTGACGTTGCAGAAGATGTGATATTTGCATTTGAGTTAGTACGTTAGTATTTGTTGAATTCCTCAGTTCCCAACCAAACTGTGATGATCGTTTAGACACAATAGACTCCATCCATTTTTTGGTATTGTGGGGGTATATTTCTTGAGAGACAAAAACAATAGTCTTTTTTCCATTTTGTATTATGAAAGTTTTTTGTTGATTTTTTTCCTTTTGCATGTTCAGAAGGAAACACAACCGTGTTTGCTTTTTTTTCATGTTGATTCTGAAATTTTGTTAGACTGTCTAGATGTCATAGGGAAAATAAAAAGAAAAAGAAAAAGAAAAGAAAACTCTCCAAAAAACGGAGATGTGACATGAAAACATCAAAATCAGCTAGGCTATAGGAGTATATTTAGTTGAGCTTAATCTGCAGAACTGTGGAATAATAGTTGCTTGGAAATAGACTTGGAGATTACCACCACTACCAAAAAGCTAAAGTTGGATGGAGGAGAACCTTATATATGTTTTTTAACTTTTGACCTTCAGTTTCCCACATTCCTTTTTCAAATACAGGCACACAGGGCCATGACTCTGCTTCCACTGCTTCAGTTCTTTGGAGACGTAATTGAAATAATGCTTTCATCTCATTTTATTTTAGGCACAGGGGGCCATGACTCTGCTTTCATCACATTCCCTTTTCAAATACAGACAATAGCATGATATTTTATGTTCATTTTCGTAGTAAAGCTGCCTAGACCTCCACCTCCATTGGAAGAAATTCTCCAGAAAATACAGCATTTAGGTTCATATAATTATGGTCCATCAAACAAATTCTTTACACAACGTGGAGTTGGCTTATCCCAACAAAATGAAAAATCTTAGTTTCCTCAGGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGTAGAATTTGCTAATGTCCAACAACAACAAGGTCAACAGTTTGCACCACAAGTCAGCCAGACTCCAGTACAAAATCTTTCTAATGGCCAGCCCAATCGATTAAACAGAAATGCAACGTCTTTGCCTCAAGAAATATTTAGGTGTTTCTGAAGAGTGTTTTTCTGCATGTTACTTTAACTAAATTTTTGTATAATATGAACACAGTGTTGCAGAGATATGTTATTTGTGCTTCTTTTGGTTACTCTATGTTCCCACTAGTCACTAGTCATTACTCAAGTTATACCTATCTTCTCCATTTGTTGATGCATTTCATAAACTATGATTAAAACTTCTGTTTTTAAAGGGGGAAAAAGGAAAGAAAAACAAAACAAAACCCATTTTCTATAACAATTCCACTTAGATAAAACCAAATACCATATAAAATGGTTGTTACACGCAAAGTAATACAAACATCGTAAAAAAAATACAATAAGTAAATATTCTATAAAATGTTCACATTGATTTTGATAACCAAAACCAAAATGTGGTAATCAAAACCAAACTATATCTAGAGAATAAAAAAATTCAAAGTAGTATAAATAAAAAGAGAAGGAAAGTCTTCAAGTTGCAGAAGGAAAGTCTTCAAATTAGATTTGTCAGAGAGATAACTTTAGTGATCTTGCAAACAACTCAGGAAACATTTTTATGATCATCTTCCACATGCATTAAAACAATGAATTTTTTTTACATCGTGATCATGCAAACAACTCAAGCACAAACCAAACAAGTAAAAAACTAATACTACATACCAAGACGAAGACTAATCTTGTATGCTCGACTTCTCGATGTATGAAATTGGATTGATACACGTTAATCTATTGTGACCTATTTCTTTACATCGATCACATTTATGCAATTTCAGTGCTTCACAGACACTTGGAATCCTCTTTTTCTTCGATCGACCAACTCTTTTGACTACTTTCGGAGGTAAGACAGTCATATGTACATATTCTTCACTTGTCTTCCATTCCGACTAATTCCTAACTAGGTAGACGACCTCCGAATATGCTGCCAACAAACATTCATTAGTGTAATAGTTAGTACATAAACTATAAACATTTATATTGCGATCCCGTGCTACGGCAATGGCATGTGCGCATGGTAGTTGCTCAGCTTGAAACTCTGTACAAGTGCACTCTTGAGTATGAAGATTTACGACCTCCTCCTTATCTAAATCTTTAACATGGAATTGGTAACAATCAATTGGGTTGACCTTCATTGTCAAAGCTCGTTATTGTTTCTTTTGTAGAACTAACTCTGCCCATTTAGTCAATGTAGATGTCACTTTCATGCCTTCTTCTCGACGCTTCCAAAACCAACGTTGTAGCAAAGCTCGAACATGTTCAAGAAATGAAGCAATAGGCAAATCTCTAGGTTCTTTGAGTATAGAATTAATGGACTCTGCTATATTTGTTATCATCATATTATATCGTCTTCCTGGACAGTGAAAACGAGACCATCGTGTTATTCCAACGTCGTTTAAATATTTTCCTAAACCATTAGAAAATGCAAAAATACTTCTTCACGTTTCTGAGAACGTTGATTCACGATATGTTCTAGATGCATTGTAAAACAAAGTAGCTACAGTGTCATTCTTATATTTATCATTCAAATTTTGAGTCAAATGTTGGACACAAAGTCCATGGAATGCGGACGGAAAAACTGATGAAATACTCTTAGAAAAACATGTTTTTCGATCTGTCACGAAACCTAGATTAGGCACCTCCCCTATTGCACCTTTCAATTTCTCTAAGAACCATTGTATTAAAGCATCTGTTTCTCTGTCCACCACTCCAAAGGCAAGAGGATAAATTTGATTCTTACCATCCAAGCAAACATAAACTATCAACTGACCCTGATATTTGTTTTTAAAGAATGTTCCATCCATGACTATAACCGGTCTAATGCAGTTTAAGAATCCTCGAACACATGGACCAAGAGCCATAAAAAGATATTTGAAGAAACGATCATTTTCAAGTTCCATGTGAAATATTGTACCTAGATTTGCAAGTTTGAGAGCTTCACCATATCTAAGCAATAGATTCTATGACTCTTCAGGACACCCTCGCACTCGTTCATACGCATTTTCTCTAGCACGCCATGCTTTTTCACAACTTATATTTATGTCATAGTCTCGCCTAATGTCTTCTATGATATCACATGGTTTGTATAGACGACCGACTCCCTTAAATTTTGACTTTATTAATTCTCCAACAACCTAAGATTTTGCTTGCATATGGTCACGATTAAAAAACTCAAGAGAACACGAATGAACTTTGACATACTTTTTAATCTTGAATATATTTGAATCCTTCAATCTCATCGCTCGCAGTCTCCAACGACACTTGTTGTCAATGCATCTAACAAAAAGAACCTCTCTTGTAGACTTTTTTACTATAAACTATAAAAAAAAGTTCATCGCCAAGACACTTAATCTCATTGACAAATCTCTTTTGCAAAAAAATATTTGTCATACATCCAACTCCTCACTTATAGACCTTTCTTCAGACCAATCACTCCTTTCTATCTTCAACTTTCGGCTAGAAGAGCTGTAATGAACTTTAGATTTTCCTTTCCAATCTTTTGTAGGAGCATCTCTATGTTGTGGGATGTCAAATGATTCACTATTCATCTCAACTGGCTCCCATGTAAAAGTGTCATCTTTTGAATCATATGACTCATATGATTTCCATATAGCTGAAGTGGTTCCTATCATGTTATCACACAAGCCAACTTCAACTTCACGAACATGAACTCCATTCTCATTTAATGTATCCATTGCAATTGGAGGATGGGGGTTTAAGTTATGAGCTTGGTTGCTCCCAGATAGTGAATTGTAATATTTGCTTAACACTTTCTTGCTTTGATTGGTTTTAGGCTCAAATGAGACGTATAAAGGGACTTCTAATGGATTTTCACTAAGAAGATAAAACTTCAAATCACGGTCATTGCTTAACTCAAATGGAGGAGCTTCGTGTTCCACTTTTATCTCATATATGCATCTTATCATTATGTCGAACTTTGTACGGTCAACTTATGCAAGGTCATATAATTCTGCATGTAAATCTTTATGTGTTATTTCTTTACTGACAACGATGCCTTTTAACATGTATCCTTTGTATTTTCTTCGTCCCTCATCCCATGTACCACCGTAACACACTAACATCCGAACATGTGACATCCTTAAACCACCTTATACTTTTTAATGCTGCAAAAATTGATTTGAAGTTAGAATTTGACATATCACATAAAAAAAGTTTATTGACTTATTTTGCGAAATTAAAAAACAATAGCTAAACACTAAATAAAACGTGCATAGTCACACCCTAAATAAGTATATGACTAATTCAGTCTTGGACATTTAAAGTTTGACAGTTGCAAAATGTTTACGATATTGCGAGATACAAAAAACAATAGTTAAAAGTCACCCTAAACCAATTCATTTGAGATTAAACATTTGAATTTAAGAACCTGCGAGATAAAAAAATAATAATAATAACTTGCTAACATCCTTTGAAACAACCCTAAATCAACCCTAAATCAACTTGAAACAATTAAAAATTATATTTGATTTATACATTTAAAATGCAAATATATATACATATAACACAACACAATTGGGATTAAAAATAAAAAATAAAACAAACCACAATGCGTGAGATGTTCACCGGAGTAGAGGATGAACGACACCGGAGTAAAGCGAAAAGCTGACAAACTTTTGAGAGATGAGAAGAATTGCAAATATGTTTTTTTTTTTTCCTTTACGTATTCTACGTTGAAGAGAGGTTGGAAGAGAAGAGACAAGTGTCAGGTAAAATTAAATAAGGGTATTTTGGACATTTCACTCCAAAATTATCCTAAATCTTAACTTTTTAAAAATCAATCATAAAACTCATTTTCTACTCCATTTCGACCTATTTTTGACAATTTTCTAAAATAGTTTCCCATGAAAATATTATCATGGAATGTTAGAGGGCTTTGCTCGGCAAAAAAAAAATAAAAAAAAAAGCACAAATAAAATCCTTTATTTCTGCCTACTGTCCTGAGTTTGTGATATTAACCTAAACTAAACTCTCTTGTGTCTCTAAACATATCATAAAATGTTTGTGGAGTTGTATCAATGTTAAATGGATTTTCTTAGAAGTGATTGGTAAATGTGGAGGCATTTTATTGATGTGGGATGATAGGAGACATTCGGTTAATAACATGATTGAAGGAAATTTTTATATTTTTGCAAACATGGCTCAAATTGGTGGCTCACTGCTATATATGACCCAGCAAAAAGGAGAAATCAAAACTTGTTTAGGACTGAATTAGAGGATTTAAAAAATAAATGTTTGCCAAGCTAGGTTCTTGGAGGTGATTTTAATGTGGTCAGATGGCATAGAGAAACTTCGGCCACCCATCCTGCATCATTCAACATGAAGAAATTCAATTCGTTCATTGATAGCAACAACCTTATTGACCCACCTCTCACAAATGCTACATATACTTAA

mRNA sequence

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAGTCCCACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGACCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATACCAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTGCAAGGGCATGAGACACTCAGTTCCATTTAAAACTGTAAAATTCGGTGGAAGCCGGAAAGGAAGGAGAAGGCCAAAGGCGACAAAGGTGGTACCAGTGGAGATGAAAATAAGAGCTACTGCTATGGATTCTAGAAGCAAAACTTTAGAGATTCTGAGTTTGGCACACAGGGCCATGACTCTGCTTCCACTGCTTCAGTTCTTTGGAGACGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGTAGAATTTGCTAATGTCCAACAACAACAAGGTCAACAGTTTGCACCACAAGTCAGCCAGACTCCAGTACAAAATCTTTCTAATGGCCAGCCCAATCGATTAAACAGAAATGCAACATGGCATAGAGAAACTTCGGCCACCCATCCTGCATCATTCAACATGAAGAAATTCAATTCGTTCATTGATAGCAACAACCTTATTGACCCACCTCTCACAAATGCTACATATACTTAA

Coding sequence (CDS)

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAGTCCCACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGACCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATACCAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTGCAAGGGCATGAGACACTCAGTTCCATTTAAAACTGTAAAATTCGGTGGAAGCCGGAAAGGAAGGAGAAGGCCAAAGGCGACAAAGGTGGTACCAGTGGAGATGAAAATAAGAGCTACTGCTATGGATTCTAGAAGCAAAACTTTAGAGATTCTGAGTTTGGCACACAGGGCCATGACTCTGCTTCCACTGCTTCAGTTCTTTGGAGACGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGTAGAATTTGCTAATGTCCAACAACAACAAGGTCAACAGTTTGCACCACAAGTCAGCCAGACTCCAGTACAAAATCTTTCTAATGGCCAGCCCAATCGATTAAACAGAAATGCAACATGGCATAGAGAAACTTCGGCCACCCATCCTGCATCATTCAACATGAAGAAATTCAATTCGTTCATTGATAGCAACAACCTTATTGACCCACCTCTCACAAATGCTACATATACTTAA

Protein sequence

MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGEECKGMRHSVPFKTVKFGGSRKGRRRPKATKVVPVEMKIRATAMDSRSKTLEILSLAHRAMTLLPLLQFFGDVPALVTQGVTGKPSTVEFANVQQQQGQQFAPQVSQTPVQNLSNGQPNRLNRNATWHRETSATHPASFNMKKFNSFIDSNNLIDPPLTNATYT
Homology
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BLAST of CsaV3_6G022450 vs. NCBI nr
Match: XP_011657268.1 (PREDICTED: 60S ribosomal protein L29-1 [Cucumis sativus] >KGN47388.1 hypothetical protein Csa_6G309950 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. NCBI nr
Match: XP_008458370.1 (PREDICTED: 60S ribosomal protein L29-1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. NCBI nr
Match: XP_010534701.1 (PREDICTED: 60S ribosomal protein L29-1 [Tarenaya hassleriana])

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-23
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQSHKAHKNGIKKPR+HRHTSTKGMDPKFLRNQRYA+KHN+KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHNSKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. NCBI nr
Match: XP_008458371.1 (PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 6.0e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. NCBI nr
Match: XP_010558440.1 (PREDICTED: 60S ribosomal protein L29-1-like [Tarenaya hassleriana])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQSHKAHKNGIKKPR+HRHTSTKGMDPKFLRNQRYA+KHN KSGE+ASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHNNKSGEDASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TAIR10
Match: AT3G06700.1 (Ribosomal L29e protein family)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TAIR10
Match: AT3G06680.1 (Ribosomal L29e protein family)

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E
Sbjct: 23 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 82

Query: 61 E 62
          E
Sbjct: 83 E 83

[Close]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match: sp|Q9M7X7|RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-22
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match: sp|Q84WM0|RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match: sp|Q58DW3|RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K  +     
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60

Query: 61 ECKGM 66
            K M
Sbjct: 61 NAKAM 65

[Close]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match: sp|P47914|RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K  +     
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60

Query: 61 ECKGM 66
            K M
Sbjct: 61 NAKAM 65

[Close]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match: sp|Q95281|RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa OX=9823 GN=RPL29 PE=1 SV=4)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K  +     
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60

Query: 61 ECKGM 66
            K M
Sbjct: 61 NAKAM 65

[Close]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match: tr|A0A0A0KCX6|A0A0A0KCX6_CUCSA (60S ribosomal protein L29 OS=Cucumis sativus OX=3659 GN=Csa_6G309950 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match: tr|A0A1S3C7U0|A0A1S3C7U0_CUCME (60S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497797 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match: tr|A0A1S3C7P2|A0A1S3C7P2_CUCME (60S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.9e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match: tr|V9HZW1|V9HZW1_IPOBA (60S ribosomal protein L29 OS=Ipomoea batatas OX=4120 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHN KSGE  SGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGEAGSGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match: tr|A0A2R6PJK9|A0A2R6PJK9_ACTCH (60S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc27140 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHN KSGE+A+ E
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGESATEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

The following BLAST results are available for this feature:
BLAST of CsaV3_6G022450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657268.13.2e-24100.00PREDICTED: 60S ribosomal protein L29-1 [Cucumis sativus] >KGN47388.1 hypothetica... [more]
XP_008458370.11.6e-2398.36PREDICTED: 60S ribosomal protein L29-1 [Cucumis melo][more]
XP_010534701.14.6e-2395.08PREDICTED: 60S ribosomal protein L29-1 [Tarenaya hassleriana][more]
XP_008458371.16.0e-2396.72PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo][more]
XP_010558440.12.3e-2293.44PREDICTED: 60S ribosomal protein L29-1-like [Tarenaya hassleriana][more]
BLAST of CsaV3_6G022450 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06700.11.5e-2386.89Ribosomal L29e protein family[more]
AT3G06680.14.2e-2386.89Ribosomal L29e protein family[more]
BLAST of CsaV3_6G022450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M7X7|RL291_ARATH2.6e-2286.8960S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1[more]
sp|Q84WM0|RL292_ARATH7.7e-2286.8960S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2[more]
sp|Q58DW3|RL29_BOVIN1.0e-1363.0860S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3[more]
sp|P47914|RL29_HUMAN1.0e-1363.0860S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2[more]
sp|Q95281|RL29_PIG1.0e-1363.0860S ribosomal protein L29 OS=Sus scrofa OX=9823 GN=RPL29 PE=1 SV=4[more]
BLAST of CsaV3_6G022450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCX6|A0A0A0KCX6_CUCSA2.1e-24100.0060S ribosomal protein L29 OS=Cucumis sativus OX=3659 GN=Csa_6G309950 PE=3 SV=1[more]
tr|A0A1S3C7U0|A0A1S3C7U0_CUCME1.0e-2398.3660S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497797 PE=3 SV=1[more]
tr|A0A1S3C7P2|A0A1S3C7P2_CUCME3.9e-2396.7260S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1[more]
tr|V9HZW1|V9HZW1_IPOBA2.2e-2191.8060S ribosomal protein L29 OS=Ipomoea batatas OX=4120 GN=RPL29 PE=2 SV=1[more]
tr|A0A2R6PJK9|A0A2R6PJK9_ACTCH6.3e-2190.1660S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G022450.1CsaV3_6G022450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 3..42
e-value: 4.9E-22
score: 77.9
IPR002673Ribosomal protein L29ePANTHERPTHR1288460S RIBOSOMAL PROTEIN L29coord: 1..61
IPR002673Ribosomal protein L29ePRODOMPD010314coord: 1..52
e-value: 2.0E-21
score: 251.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..178
NoneNo IPR availablePANTHERPTHR12884:SF060S RIBOSOMAL PROTEIN L29coord: 1..61

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G022450CmaCh17G003600Cucurbita maxima (Rimu)cmacucB0450
CsaV3_6G022450CmaCh08G012680Cucurbita maxima (Rimu)cmacucB1074
CsaV3_6G022450CmoCh17G003510Cucurbita moschata (Rifu)cmocucB0443
CsaV3_6G022450CmoCh08G012380Cucurbita moschata (Rifu)cmocucB1056
CsaV3_6G022450Cp4.1LG12g03050Cucurbita pepo (Zucchini)cpecucB0175
CsaV3_6G022450Cp4.1LG17g00160Cucurbita pepo (Zucchini)cpecucB0404
CsaV3_6G022450Carg05539Silver-seed gourdcarcucB0086
CsaV3_6G022450Carg18880Silver-seed gourdcarcucB0742
CsaV3_6G022450Cla009257Watermelon (97103) v1cucwmB563
CsaV3_6G022450MELO3C021278Melon (DHL92) v3.5.1cucmeB447
CsaV3_6G022450ClCG06G004680Watermelon (Charleston Gray)cucwcgB498
CsaV3_6G022450Lsi09G014800Bottle gourd (USVL1VR-Ls)cuclsiB425
CsaV3_6G022450MELO3C021278.2Melon (DHL92) v3.6.1cucmedB439
CsaV3_6G022450Cla97C06G114130Watermelon (97103) v2cucwmbB488
CsaV3_6G022450Bhi12G001710Wax gourdcucwgoB564
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G022450Cucumber (Chinese Long) v3cuccucB148
CsaV3_6G022450Silver-seed gourdcarcucB0085
CsaV3_6G022450Silver-seed gourdcarcucB0310
CsaV3_6G022450Cucumber (Gy14) v2cgybcucB149
CsaV3_6G022450Cucumber (Gy14) v2cgybcucB298
CsaV3_6G022450Cucumber (Gy14) v1cgycucB396
CsaV3_6G022450Cucumber (Gy14) v1cgycucB505
CsaV3_6G022450Cucurbita maxima (Rimu)cmacucB0311
CsaV3_6G022450Cucurbita maxima (Rimu)cmacucB1001
CsaV3_6G022450Cucurbita moschata (Rifu)cmocucB0304
CsaV3_6G022450Cucurbita moschata (Rifu)cmocucB0442
CsaV3_6G022450Cucurbita pepo (Zucchini)cpecucB0780
CsaV3_6G022450Wild cucumber (PI 183967)cpicucB185
CsaV3_6G022450Wild cucumber (PI 183967)cpicucB365
CsaV3_6G022450Bottle gourd (USVL1VR-Ls)cuclsiB492
CsaV3_6G022450Melon (DHL92) v3.5.1cucmeB509
CsaV3_6G022450Melon (DHL92) v3.6.1cucmedB497
CsaV3_6G022450Watermelon (Charleston Gray)cucwcgB494
CsaV3_6G022450Watermelon (97103) v1cucwmB522
CsaV3_6G022450Watermelon (97103) v2cucwmbB483
CsaV3_6G022450Wax gourdcucwgoB576