CsaV3_6G022050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G022050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 15040085 .. 15043800 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGAAAGAATGAACAAAGCAATTTATGGCGTCACAAGCAGGAACCTCAAAATAGTTATGCACTATCATTTTCTTCCTATGACGTTTGTTGCTATCCTGCAGTTATGGTAGGCAACTGTAATACATTAACAGTTTATGGATTGCTTACATATATCATGGTTTGAAGTTGTTGCTATCTTGCAGTTATGGTAGCAATTAAGATGTTTTTTGTATATTTGTTTTATTAGATGTAGGATGAAATATAGTTTTGTTTTTGTAAGTTGTAATTGTTTTGGTCATGTAAAGTTGTTCTAAGGAGTTTTGTTTTTAAGTTGCTATGTTTTCGTTGTAGAGAGGGGTTCATGAACATGTGTTTATATTTTAAAGTTGTTAGATTTTGGTTGTTTTTGTTATTATTTTGGTTTTATAAATTATTTAGTATGTAAGTTGTTATTTTATTTGGTTATAGAGAAAATTATATAAACTGTTATTGTAAGTTTATTTTTTAGTTAAGGTAGGTAAAGTTTTTTTTTTTATATATATATATGGAATATATTTCTATTGTTTTGTGTCATTTGTTTTTGAGGTTCAACTTTCAAGAAAGAAATGTCAAACAAATTAGTGGTTATGTACTATTTATGTGTTTATTGTAAATTTTTGTTATTTTTTATGATTTTGTCATTTTTATTTTCTTATATTTCTATAGTTTGAATTGTGCTTAGTTACAGATCAAAAGCAATGTGAAAAAATAATACAAATATAAAATATGTATTTTAAAGGATAGACTTTTGCCCACAACATCATTTTAAAAGCGTCGACATTTCATGGATTTGTCGACAAAAGTTATAGCTGTCGGCGTAACAGATCAACATTGTCGGTAAGAAATATTGTCGCTAATACAAGGATATGCCGATGACATTTTTACACCGTCGGCAAAATATACCCACGAATTATTGCGAATATCCCTTTCGCCGACGGTTAATTTCTCTTGTCGCCATAGTTTCGTTGGTTCAATTTCATCGATAGTTCATGTTTTCATCGTCGGTGGAGGATCTTCCGATGGACCTACGCCGATGGTGTGTGCTAACGACTTATTTTCGTTGGCAAAAGAAAAACTGACAAGTTTTTGAAGATTTGCCGACGATATTTGTCATCGGCAAATGGTAAATTTCTTGTAGTATAACCGATTTTAACTTTTGGTTCAATATTCTTTTGTTATGTTAATATATAACGCATAATTTCGTTAGATGGTTGAAATGAAATTCATCTTATTTTCATAACAAATGGCTACATAATCACATGCTTGTCTTTAACTTATTTGAAGATATAGTAATGTACAAGGTTGTTACACATCTGGATTAGTTCTTACAAGTAATTTATCTTCTTCTCCCTTTTATGTCAATGCATTATAATTATTTTAGTACATATCTTTAGAGGTCACCTCTTAATCTATAGTAATTACTATACAAATTTTAGTTTAAAATTTTATACATATATACACACATGCATTTTCACTAAAGTCATGACTTTATTTTTGTTCTTTCACTTCAATCTATTTTTTTCTCCTACTTTAATTTCAATATTGATTTGCTGATTTGCTCCTAAAGATAATGCTGATTTGCTCTATATTGAGGTTTGTTTTTGCCATGTTCTCTGTTTGTAGGATTGTTTTAGTCGTGTTTCTTTCTTTCTTTCTTTGGTTTGTTTTGTGTGGCGTTTTGTCCTATTGTGTGCTCTGACTATGGATTGTGAGATTTCCTTGTTGTTTAATGTATACATTTTTTAAAAAAAAGATGAACAAAGTAATATATTATAAAATGATTTTTTTTTTGTAGTGGAAGGGGTTATTGCTCATACAGAAAACTTACCATCCATTACATGGCAAAGTGTATACCGTGCCTCATTCACAACTCAAACTCCCTTTTGTTTTATACTTTAAGATATTTTTGATTTTGATAGGTTGGTTTTTTCTTTAATCTAACGTAACTTTCCATTCAAACACATTTAAAGTTTCTAACCCTTTTAGTTCGTGATTTGATGTTATTTTAAATTTTAAATTTTTATTTAATTATTTATGAAAAGTTTTAGACTATCCGTGACATCTATAAAAGAAAAAGCAATATAATTTTAAGATTATTTTCGTACGTGATAAACGGATCAACTTATTTATAAATATAGTAATAGTAAATAAAAAAATCTCAACCCATTGAAAATTTTATTTATGTTTGAAAATATTTGGGTATGTTTTCATTTAAAGCAATATTTCCAAATAACAAATTATAAAGAGTTGAAATATTCTATCTACCACATTCATTCTTACAAGAAGACAACAATAATAAAAGTTGGTAAAAGTATTTTTGTAGGCACATATATAAACACACACGTAAAATAATAATAAAAACAAGTAAATACAAATAATGGGGATAGGAATTGTATTCTCCCATTCTCTATTCCCTCCTCGTCTCCGACCTAAACAAGGAGTCATAAGCCTCACAATAAAAGCTTATCTCTCTGTTTTTTAGTTTTCCTCCATCATCCTCCTACAGTTGTACTCAAATATAATAAAAAAATGTGTAAATAATATTTTGGTTCGTGTATTTTTTACGTTGATTAGTATTCTTTATATTTTCAATATCTTCATTTTGATTCCTCTATTTTTAACTTTGGTTCATCTTCGTCGTTTTATTTTAATTTATAAGGAGTACGAGGATAGTTACTTTTTAAGTTGAAAGACTAAAATAAAATCAAATTTCGAGCGGAAACTAAAAGTAAAATAAACAATAAATAAATATATATATATATAAATAAAATTAAAAGGTATAGGTTTAATAGTAATCTTATTTGTTAAAAATAAAAATGAAAGGGAGTATAGTTTTGGTTGTGGGTGCCAAATTATGGGCCAAAGAAGAAAGAAGAAGTAAGGAGAAAGGGCTTTAGGCTTTAGGTCCACAAAAACCACCAATCACAAAACGAAGGGGAAAAAGTGAAAAAAAAAGCCGAAGGCCAACGAAGACGGTTCGCCGCTGCCATCACCGTCGCATACCGACTTTCTTCATCCTCTCTCTTCTCAATTAGGGCACACAACTACGATCTTTCTTTCTCAACCGGACGTCTTTCCGATCTGCTTTTCAGGTTTGATTTCATTTCTGATCCAGATTTACACATTTCGTTTTGCCTTCCGATCTTTATTTTTCTTCCTTTTATCTATCAATGCTGCTCCAAGGGTTTCCTCACATACTCTCGAGTTCTTTTCTTTTGTGGTTCTACTCTGAAAAGGATTATTTGAATAGAATCAGTTCAGAAACACTACGACAATTCTCATTTTGTTTATTTGTTTTAGTTGAGGGATAATCATTCATTTTTAGTAGATGTAATTACCTTTTTCTGTGTGTTAGACGGCGATATCGTGTTTGTCTTTGGAAGATTTTTGAAGAGTTTCTGAGTCGTTGGTTGCTTCTATAGATATGCGTTACTTTACTAGTTACAGTCCTTGATTTTGTTATGGAGGTTTGGATTTCATTTTACTTTTATTATCTTGTTTGGAGGCTGCCTAGACTACAGTGACTACGCTTTTCTAAAAGCAATCTGAGAATTGTACACGTTAGAAGTATAATATATGTACTCCTTGTTTTTCATATTATACTGGCTCTGCAGCCACATTGGGTTTAGTTTTGGTGTTTTTATCGTACTTATGGGCTTACTCTTACACTATACTATTATTTTCAGGCTGTAA

mRNA sequence

ATGTATAGAAAGAATGAACAAAGCAATTTATGGCGTCACAAGCAGGAACCTCAAAATAGTTATGCACTATCATTTTCTTCCTATGACGTTTGTTGCTATCCTGCAGTTATGGTCCACAAAAACCACCAATCACAAAACGAAGGGGAAAAAGTGAAAAAAAAAGCCGAAGGCCAACGAAGACGGTTCGCCGCTGCCATCACCGTCGCATACCGACTTTCTTCATCCTCTCTCTTCTCAATTAGGGCACACAACTACGATCTTTCTTTCTCAACCGGACGTCTTTCCGATCTGCTTTTCAGGCTGTAA

Coding sequence (CDS)

ATGTATAGAAAGAATGAACAAAGCAATTTATGGCGTCACAAGCAGGAACCTCAAAATAGTTATGCACTATCATTTTCTTCCTATGACGTTTGTTGCTATCCTGCAGTTATGGTCCACAAAAACCACCAATCACAAAACGAAGGGGAAAAAGTGAAAAAAAAAGCCGAAGGCCAACGAAGACGGTTCGCCGCTGCCATCACCGTCGCATACCGACTTTCTTCATCCTCTCTCTTCTCAATTAGGGCACACAACTACGATCTTTCTTTCTCAACCGGACGTCTTTCCGATCTGCTTTTCAGGCTGTAA

Protein sequence

MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRRRFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL
Homology
[Close]
BLAST of CsaV3_6G022050 vs. NCBI nr
Match: KGN47346.1 (hypothetical protein Csa_6G302140 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 8.4e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR 60
           MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR
Sbjct: 1   MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR 60

Query: 61  RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL 102
           RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL
Sbjct: 61  RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL 101

[Close]
BLAST of CsaV3_6G022050 vs. TrEMBL
Match: tr|A0A0A0KHU5|A0A0A0KHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G302140 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR 60
           MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR
Sbjct: 1   MYRKNEQSNLWRHKQEPQNSYALSFSSYDVCCYPAVMVHKNHQSQNEGEKVKKKAEGQRR 60

Query: 61  RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL 102
           RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL
Sbjct: 61  RFAAAITVAYRLSSSSLFSIRAHNYDLSFSTGRLSDLLFRL 101

The following BLAST results are available for this feature:
BLAST of CsaV3_6G022050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47346.18.4e-49100.00hypothetical protein Csa_6G302140 [Cucumis sativus][more]
BLAST of CsaV3_6G022050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G022050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G022050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHU5|A0A0A0KHU5_CUCSA5.5e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G302140 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G022050.1CsaV3_6G022050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G022050Cucumber (Chinese Long) v3cuccucB054
CsaV3_6G022050Cucumber (Chinese Long) v3cuccucB180
CsaV3_6G022050Cucumber (Chinese Long) v3cuccucB202
CsaV3_6G022050Silver-seed gourdcarcucB0339
CsaV3_6G022050Silver-seed gourdcarcucB0371
CsaV3_6G022050Silver-seed gourdcarcucB0478
CsaV3_6G022050Cucumber (Gy14) v2cgybcucB298
CsaV3_6G022050Cucumber (Gy14) v1cgycucB061
CsaV3_6G022050Cucumber (Gy14) v1cgycucB266
CsaV3_6G022050Cucumber (Gy14) v1cgycucB577
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB0266
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB0678
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB0755
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB0916
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB0915
CsaV3_6G022050Cucurbita maxima (Rimu)cmacucB1034
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB0255
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB0661
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB0744
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB0907
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB0908
CsaV3_6G022050Cucurbita moschata (Rifu)cmocucB1018
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0350
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0578
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0579
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0622
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0651
CsaV3_6G022050Cucurbita pepo (Zucchini)cpecucB0924
CsaV3_6G022050Wild cucumber (PI 183967)cpicucB058
CsaV3_6G022050Wild cucumber (PI 183967)cpicucB241
CsaV3_6G022050Wild cucumber (PI 183967)cpicucB365
CsaV3_6G022050Bottle gourd (USVL1VR-Ls)cuclsiB431
CsaV3_6G022050Bottle gourd (USVL1VR-Ls)cuclsiB460
CsaV3_6G022050Bottle gourd (USVL1VR-Ls)cuclsiB468
CsaV3_6G022050Bottle gourd (USVL1VR-Ls)cuclsiB469
CsaV3_6G022050Bottle gourd (USVL1VR-Ls)cuclsiB482
CsaV3_6G022050Melon (DHL92) v3.5.1cucmeB427
CsaV3_6G022050Melon (DHL92) v3.5.1cucmeB463
CsaV3_6G022050Melon (DHL92) v3.6.1cucmedB453
CsaV3_6G022050Watermelon (Charleston Gray)cucwcgB465
CsaV3_6G022050Watermelon (Charleston Gray)cucwcgB473
CsaV3_6G022050Watermelon (Charleston Gray)cucwcgB482
CsaV3_6G022050Watermelon (Charleston Gray)cucwcgB484
CsaV3_6G022050Watermelon (Charleston Gray)cucwcgB489
CsaV3_6G022050Watermelon (97103) v1cucwmB505
CsaV3_6G022050Watermelon (97103) v1cucwmB507
CsaV3_6G022050Watermelon (97103) v1cucwmB534
CsaV3_6G022050Watermelon (97103) v1cucwmB542
CsaV3_6G022050Watermelon (97103) v1cucwmB551
CsaV3_6G022050Watermelon (97103) v2cucwmbB435
CsaV3_6G022050Watermelon (97103) v2cucwmbB452
CsaV3_6G022050Watermelon (97103) v2cucwmbB462
CsaV3_6G022050Watermelon (97103) v2cucwmbB469
CsaV3_6G022050Watermelon (97103) v2cucwmbB471
CsaV3_6G022050Watermelon (97103) v2cucwmbB477
CsaV3_6G022050Wax gourdcucwgoB542
CsaV3_6G022050Wax gourdcucwgoB619