CsaV3_6G021990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G021990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 14999222 .. 14999527 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGCCCATCTCTGGCAATGGCCATTACCGAGTTGACTCACTGGTCTCTCTCGCTTCGTCTCGTCTCTGTGTTGCTGAGCCCTATTTGCTTCTCCTTCTTTCTTCCTTCTTCTTTTCCAATTCCAATTCCCTTACGGTTTCTCCTTTTTCTGCCCCTTTTTCGTCTTTTCCACTCTTCTTCTTCTTCTTCATCTTCTTCATCTTCTCAATCTGACGTTCCTTCTCCCTCCACGTCATCATCGTCTTCTTCTTCAATCCCTTTCGGACCTGCTCTTCTTCTCTTTAACCACACTTATATTTAA

mRNA sequence

ATGGCCCGCCCATCTCTGGCAATGGCCATTACCGAGTTGACTCACTGGTCTCTCTCGCTTCGTCTCGTCTCTGTGTTGCTGAGCCCTATTTGCTTCTCCTTCTTTCTTCCTTCTTCTTTTCCAATTCCAATTCCCTTACGGTTTCTCCTTTTTCTGCCCCTTTTTCGTCTTTTCCACTCTTCTTCTTCTTCTTCATCTTCTTCATCTTCTCAATCTGACGTTCCTTCTCCCTCCACGTCATCATCGTCTTCTTCTTCAATCCCTTTCGGACCTGCTCTTCTTCTCTTTAACCACACTTATATTTAA

Coding sequence (CDS)

ATGGCCCGCCCATCTCTGGCAATGGCCATTACCGAGTTGACTCACTGGTCTCTCTCGCTTCGTCTCGTCTCTGTGTTGCTGAGCCCTATTTGCTTCTCCTTCTTTCTTCCTTCTTCTTTTCCAATTCCAATTCCCTTACGGTTTCTCCTTTTTCTGCCCCTTTTTCGTCTTTTCCACTCTTCTTCTTCTTCTTCATCTTCTTCATCTTCTCAATCTGACGTTCCTTCTCCCTCCACGTCATCATCGTCTTCTTCTTCAATCCCTTTCGGACCTGCTCTTCTTCTCTTTAACCACACTTATATTTAA

Protein sequence

MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIPIPLRFLLFLPLFRLFHSSSSSSSSSSSQSDVPSPSTSSSSSSSIPFGPALLLFNHTYI

Homology

[Close]

BLAST of CsaV3_6G021990 vs. NCBI nr
Match: KGN47340.1 (hypothetical protein Csa_6G301590 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX 60
           MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX
Sbjct: 1   MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI 102
           XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI 101

[Close]

BLAST of CsaV3_6G021990 vs. TrEMBL
Match: tr|A0A0A0KC90|A0A0A0KC90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301590 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX 60
           MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX
Sbjct: 1   MARPSLAMAITELTHWSLSLRLVSVLLSPICFSFFLPSSFPIXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI 102
           XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXPFGPALLLFNHTYI 101

The following BLAST results are available for this feature:

BLAST of CsaV3_6G021990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47340.1	1.9e-16	100.00	hypothetical protein Csa_6G301590 [Cucumis sativus]	[more]

BLAST of CsaV3_6G021990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G021990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G021990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KC90\|A0A0A0KC90_CUCSA	1.2e-16	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301590 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G021990.1	CsaV3_6G021990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G021990	CSPI06G16570	Wild cucumber (PI 183967)	cpicucB365
CsaV3_6G021990	CsGy6G016130	Cucumber (Gy14) v2	cgybcucB298

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G021990	Silver-seed gourd	carcucB0339
CsaV3_6G021990	Silver-seed gourd	carcucB0371
CsaV3_6G021990	Silver-seed gourd	carcucB0478
CsaV3_6G021990	Cucumber (Gy14) v1	cgycucB061
CsaV3_6G021990	Cucumber (Gy14) v1	cgycucB266
CsaV3_6G021990	Cucumber (Gy14) v1	cgycucB577
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0266
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0578
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0678
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0755
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0916
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB0915
CsaV3_6G021990	Cucurbita maxima (Rimu)	cmacucB1034
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0255
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0569
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0661
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0744
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0907
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB0908
CsaV3_6G021990	Cucurbita moschata (Rifu)	cmocucB1018
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0350
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0578
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0579
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0622
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0651
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0725
CsaV3_6G021990	Cucurbita pepo (Zucchini)	cpecucB0924
CsaV3_6G021990	Wild cucumber (PI 183967)	cpicucB058
CsaV3_6G021990	Wild cucumber (PI 183967)	cpicucB241
CsaV3_6G021990	Bottle gourd (USVL1VR-Ls)	cuclsiB431
CsaV3_6G021990	Bottle gourd (USVL1VR-Ls)	cuclsiB460
CsaV3_6G021990	Bottle gourd (USVL1VR-Ls)	cuclsiB468
CsaV3_6G021990	Bottle gourd (USVL1VR-Ls)	cuclsiB469
CsaV3_6G021990	Bottle gourd (USVL1VR-Ls)	cuclsiB482
CsaV3_6G021990	Melon (DHL92) v3.5.1	cucmeB427
CsaV3_6G021990	Melon (DHL92) v3.5.1	cucmeB451
CsaV3_6G021990	Melon (DHL92) v3.5.1	cucmeB463
CsaV3_6G021990	Melon (DHL92) v3.6.1	cucmedB442
CsaV3_6G021990	Melon (DHL92) v3.6.1	cucmedB453
CsaV3_6G021990	Watermelon (Charleston Gray)	cucwcgB465
CsaV3_6G021990	Watermelon (Charleston Gray)	cucwcgB473
CsaV3_6G021990	Watermelon (Charleston Gray)	cucwcgB482
CsaV3_6G021990	Watermelon (Charleston Gray)	cucwcgB484
CsaV3_6G021990	Watermelon (Charleston Gray)	cucwcgB489
CsaV3_6G021990	Watermelon (97103) v1	cucwmB505
CsaV3_6G021990	Watermelon (97103) v1	cucwmB507
CsaV3_6G021990	Watermelon (97103) v1	cucwmB534
CsaV3_6G021990	Watermelon (97103) v1	cucwmB542
CsaV3_6G021990	Watermelon (97103) v1	cucwmB551
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB435
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB452
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB462
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB469
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB471
CsaV3_6G021990	Watermelon (97103) v2	cucwmbB477
CsaV3_6G021990	Wax gourd	cucwgoB542
CsaV3_6G021990	Wax gourd	cucwgoB619
CsaV3_6G021990	Cucumber (Chinese Long) v3	cuccucB054
CsaV3_6G021990	Cucumber (Chinese Long) v3	cuccucB180
CsaV3_6G021990	Cucumber (Chinese Long) v3	cuccucB202