CsaV3_6G018730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G018730
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 13293670 .. 13294149 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAATCGACCCAATTTCAGACGTTTCTATCACCAATCCTGGCAGCCTCATCTCTGAAAATAAATTTGCCCCATATGAAGTTGATGATTAGTGACACATCCCTGATTCTTTTACCGACTGCCATACTCTTCCACGATGAAAGTTCCATGAAAAGAATTAGAGAAGAGGGCCTTCAGCTAGTAGCTTTAGAGGAAAACACCAATCATCCATTGCCCATTGAAGAGACAACTAAAATTGAAAGTGTAATAGAATTAGAACCAGCAGCCTCTATGCAAAATCCTTTTCTGTTGAGCAAGGAAGTGGTAGCAACTCTTCTTGAATATGATTTATGCATTTGGGCTGTGACTAGGAAAGGGAAACCGCAGAGAAAGGGTGGGGCCTCCTCGAATAGCAACGAGAAGCTCACTAGAGAAGTTAAAGCTTTGTTAGGTAGTTGGGAAAGGGAGGTTCAAGCGGCAAAAGCTATTAATTTCTAG

mRNA sequence

ATGATGAAATCGACCCAATTTCAGACGTTTCTATCACCAATCCTGGCAGCCTCATCTCTGAAAATAAATTTGCCCCATATGAAGTTGATGATTAGTGACACATCCCTGATTCTTTTACCGACTGCCATACTCTTCCACGATGAAAGTTCCATGAAAAGAATTAGAGAAGAGGGCCTTCAGCTAGTAGCTTTAGAGGAAAACACCAATCATCCATTGCCCATTGAAGAGACAACTAAAATTGAAAGTGTAATAGAATTAGAACCAGCAGCCTCTATGCAAAATCCTTTTCTGTTGAGCAAGGAAGTGGTAGCAACTCTTCTTGAATATGATTTATGCATTTGGGCTGTGACTAGGAAAGGGAAACCGCAGAGAAAGGGTGGGGCCTCCTCGAATAGCAACGAGAAGCTCACTAGAGAAGTTAAAGCTTTGTTAGGTAGTTGGGAAAGGGAGGTTCAAGCGGCAAAAGCTATTAATTTCTAG

Coding sequence (CDS)

ATGATGAAATCGACCCAATTTCAGACGTTTCTATCACCAATCCTGGCAGCCTCATCTCTGAAAATAAATTTGCCCCATATGAAGTTGATGATTAGTGACACATCCCTGATTCTTTTACCGACTGCCATACTCTTCCACGATGAAAGTTCCATGAAAAGAATTAGAGAAGAGGGCCTTCAGCTAGTAGCTTTAGAGGAAAACACCAATCATCCATTGCCCATTGAAGAGACAACTAAAATTGAAAGTGTAATAGAATTAGAACCAGCAGCCTCTATGCAAAATCCTTTTCTGTTGAGCAAGGAAGTGGTAGCAACTCTTCTTGAATATGATTTATGCATTTGGGCTGTGACTAGGAAAGGGAAACCGCAGAGAAAGGGTGGGGCCTCCTCGAATAGCAACGAGAAGCTCACTAGAGAAGTTAAAGCTTTGTTAGGTAGTTGGGAAAGGGAGGTTCAAGCGGCAAAAGCTATTAATTTCTAG

Protein sequence

MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKGKPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF
Homology
[Close]
BLAST of CsaV3_6G018730 vs. NCBI nr
Match: KGN47248.1 (hypothetical protein Csa_6G235560 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 3.2e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60
           MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ
Sbjct: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60

Query: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120
           LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG
Sbjct: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120

Query: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF 160
           KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF
Sbjct: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF 159

[Close]
BLAST of CsaV3_6G018730 vs. NCBI nr
Match: KGN58525.1 (hypothetical protein Csa_3G656530 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0 

Query: 44  LFHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVV 103
           LFH+ S+ +R REEGLQL+A+E+ +  PL  EE  +IESV ELEPAAS+QNPF LSKEVV
Sbjct: 33  LFHEVSTTERGREEGLQLIAVEDTSEFPLSNEELYEIESVTELEPAASIQNPFPLSKEVV 92

Query: 104 ATLLEYDLCIWAVTRKGKPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAIN 159
           A LLEYDLCI AVTRKGK  RKGGAS N+N+KLT+EVKALLGSWERE QA K  N
Sbjct: 93  AALLEYDLCIRAVTRKGKQHRKGGASLNNNKKLTKEVKALLGSWEREAQAEKDNN 147

[Close]
BLAST of CsaV3_6G018730 vs. NCBI nr
Match: KGN43156.1 (hypothetical protein Csa_7G004090 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 6.8e-21
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 0 

Query: 44  LFHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVV 103
           LF D+ S  R +E G QL+ LEEN + PLP ++ T+IES  +LE  A++ N F LSKEVV
Sbjct: 66  LFQDDGSNDRNKEGGHQLMVLEENNDLPLPNDKATEIESATKLEQVATLLNHFPLSKEVV 125

Query: 104 ATLLEYDLCIWAVTRKGKPQRKGGASSNSNEKLTREVKALLGSWEREV 152
              LEY+LCI  VTRKGK Q KG AS  S++KLTREVKALLG+WE  V
Sbjct: 126 LAFLEYNLCIRVVTRKGKLQGKGEASL-SSKKLTREVKALLGNWESAV 172

[Close]
BLAST of CsaV3_6G018730 vs. NCBI nr
Match: KGN46938.1 (hypothetical protein Csa_6G151750 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 7.0e-18
Identity = 69/158 (43.67%), Postives = 77/158 (48.73%), Query Frame = 0 

Query: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60
           MMKS QFQTFLSP+  ASSLK                                       
Sbjct: 1   MMKSIQFQTFLSPVRVASSLK--------------------------------------- 60

Query: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120
                 N   PL +E         +L+  +   +  L   EVVA LLEYDLCI  VTRKG
Sbjct: 61  ------NKFSPLEVE---------DLQHISDFSSVRLFRDEVVAALLEYDLCIRTVTRKG 104

Query: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAIN 159
           KP RKGGASS SN+K TREVKALLGSW+RE QA K  N
Sbjct: 121 KPHRKGGASSISNKKRTREVKALLGSWKREAQATKVSN 104

[Close]
BLAST of CsaV3_6G018730 vs. NCBI nr
Match: KGN54886.1 (hypothetical protein Csa_4G572310 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-14
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 45  FHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVA 104
           FH+ S+ +R+REEGLQL+ALE+N   PLP EETT+IESV ELEPA  +QNPF LSKEVVA
Sbjct: 457 FHEVSTTERVREEGLQLIALEKNIVLPLPNEETTEIESVTELEPAVFIQNPFPLSKEVVA 516

Query: 105 TLLE 109
            LLE
Sbjct: 517 ALLE 520

[Close]
BLAST of CsaV3_6G018730 vs. TrEMBL
Match: tr|A0A0A0KCH2|A0A0A0KCH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235560 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60
           MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ
Sbjct: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60

Query: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120
           LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG
Sbjct: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120

Query: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF 160
           KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF
Sbjct: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAINF 159

[Close]
BLAST of CsaV3_6G018730 vs. TrEMBL
Match: tr|A0A0A0L9C9|A0A0A0L9C9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656530 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.3e-35
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0 

Query: 44  LFHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVV 103
           LFH+ S+ +R REEGLQL+A+E+ +  PL  EE  +IESV ELEPAAS+QNPF LSKEVV
Sbjct: 33  LFHEVSTTERGREEGLQLIAVEDTSEFPLSNEELYEIESVTELEPAASIQNPFPLSKEVV 92

Query: 104 ATLLEYDLCIWAVTRKGKPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAIN 159
           A LLEYDLCI AVTRKGK  RKGGAS N+N+KLT+EVKALLGSWERE QA K  N
Sbjct: 93  AALLEYDLCIRAVTRKGKQHRKGGASLNNNKKLTKEVKALLGSWEREAQAEKDNN 147

[Close]
BLAST of CsaV3_6G018730 vs. TrEMBL
Match: tr|A0A0A0K5P3|A0A0A0K5P3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004090 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 0 

Query: 44  LFHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVV 103
           LF D+ S  R +E G QL+ LEEN + PLP ++ T+IES  +LE  A++ N F LSKEVV
Sbjct: 66  LFQDDGSNDRNKEGGHQLMVLEENNDLPLPNDKATEIESATKLEQVATLLNHFPLSKEVV 125

Query: 104 ATLLEYDLCIWAVTRKGKPQRKGGASSNSNEKLTREVKALLGSWEREV 152
              LEY+LCI  VTRKGK Q KG AS  S++KLTREVKALLG+WE  V
Sbjct: 126 LAFLEYNLCIRVVTRKGKLQGKGEASL-SSKKLTREVKALLGNWESAV 172

[Close]
BLAST of CsaV3_6G018730 vs. TrEMBL
Match: tr|A0A0A0KBR4|A0A0A0KBR4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151750 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 69/158 (43.67%), Postives = 77/158 (48.73%), Query Frame = 0 

Query: 1   MMKSTQFQTFLSPILAASSLKINLPHMKLMISDTSLILLPTAILFHDESSMKRIREEGLQ 60
           MMKS QFQTFLSP+  ASSLK                                       
Sbjct: 1   MMKSIQFQTFLSPVRVASSLK--------------------------------------- 60

Query: 61  LVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWAVTRKG 120
                 N   PL +E         +L+  +   +  L   EVVA LLEYDLCI  VTRKG
Sbjct: 61  ------NKFSPLEVE---------DLQHISDFSSVRLFRDEVVAALLEYDLCIRTVTRKG 104

Query: 121 KPQRKGGASSNSNEKLTREVKALLGSWEREVQAAKAIN 159
           KP RKGGASS SN+K TREVKALLGSW+RE QA K  N
Sbjct: 121 KPHRKGGASSISNKKRTREVKALLGSWKREAQATKVSN 104

[Close]
BLAST of CsaV3_6G018730 vs. TrEMBL
Match: tr|A0A0A0L427|A0A0A0L427_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572310 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 45  FHDESSMKRIREEGLQLVALEENTNHPLPIEETTKIESVIELEPAASMQNPFLLSKEVVA 104
           FH+ S+ +R+REEGLQL+ALE+N   PLP EETT+IESV ELEPA  +QNPF LSKEVVA
Sbjct: 457 FHEVSTTERVREEGLQLIALEKNIVLPLPNEETTEIESVTELEPAVFIQNPFPLSKEVVA 516

Query: 105 TLLE 109
            LLE
Sbjct: 517 ALLE 520

The following BLAST results are available for this feature:
BLAST of CsaV3_6G018730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47248.13.2e-79100.00hypothetical protein Csa_6G235560 [Cucumis sativus][more]
KGN58525.11.4e-3471.30hypothetical protein Csa_3G656530 [Cucumis sativus][more]
KGN43156.16.8e-2158.33hypothetical protein Csa_7G004090 [Cucumis sativus][more]
KGN46938.17.0e-1843.67hypothetical protein Csa_6G151750 [Cucumis sativus][more]
KGN54886.16.2e-1470.31hypothetical protein Csa_4G572310 [Cucumis sativus][more]
BLAST of CsaV3_6G018730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G018730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G018730 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCH2|A0A0A0KCH2_CUCSA2.1e-79100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235560 PE=4 SV=1[more]
tr|A0A0A0L9C9|A0A0A0L9C9_CUCSA9.3e-3571.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656530 PE=4 SV=1[more]
tr|A0A0A0K5P3|A0A0A0K5P3_CUCSA4.5e-2158.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004090 PE=4 SV=1[more]
tr|A0A0A0KBR4|A0A0A0KBR4_CUCSA4.6e-1843.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151750 PE=4 SV=1[more]
tr|A0A0A0L427|A0A0A0L427_CUCSA4.1e-1470.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572310 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G018730.1CsaV3_6G018730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G018730Cucumber (Gy14) v2cgybcucB298
CsaV3_6G018730Wild cucumber (PI 183967)cpicucB370