CsaV3_6G017250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G017250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein SRC2-like isoform X1
Location	chr6 : 12793111 .. 12793377 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACTTTATTCTAGAAATGAATGTCATTTGTGTGGAAGGGCTTGAGGAACTCAACCAAATTTCTTCTCCAAATTTGAGTGTTTATGTGATGGTTCTACTAAAAGGGGCTTCTTTGAAGGACCAAAATGCAAACACCAACATGGTTGAAGGAGGCCAAAATCCTTCATGGAATTATACGGTCAAGTTTGTCATTGATACAAGTAAGCAAATTCAAGCTCTAAAATCTCAACTTATGTTCACTATCATATCCAAAAACAATTAG

mRNA sequence

ATGAGTTACTTTATTCTAGAAATGAATGTCATTTGTGTGGAAGGGCTTGAGGAACTCAACCAAATTTCTTCTCCAAATTTGAGTGTTTATGTGATGGTTCTACTAAAAGGGGCTTCTTTGAAGGACCAAAATGCAAACACCAACATGGTTGAAGGAGGCCAAAATCCTTCATGGAATTATACGGTCAAGTTTGTCATTGATACAAGTAAGCAAATTCAAGCTCTAAAATCTCAACTTATGTTCACTATCATATCCAAAAACAATTAG

Coding sequence (CDS)

ATGAGTTACTTTATTCTAGAAATGAATGTCATTTGTGTGGAAGGGCTTGAGGAACTCAACCAAATTTCTTCTCCAAATTTGAGTGTTTATGTGATGGTTCTACTAAAAGGGGCTTCTTTGAAGGACCAAAATGCAAACACCAACATGGTTGAAGGAGGCCAAAATCCTTCATGGAATTATACGGTCAAGTTTGTCATTGATACAAGTAAGCAAATTCAAGCTCTAAAATCTCAACTTATGTTCACTATCATATCCAAAAACAATTAG

Protein sequence

MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNYTVKFVIDTSKQIQALKSQLMFTIISKNN

Homology

[Close]

BLAST of CsaV3_6G017250 vs. NCBI nr
Match: KGN47186.1 (hypothetical protein Csa_6G194700 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60
          MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY
Sbjct: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60

Query: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 89
          TVKFVIDTSKQIQALKSQLMFTIISKNN
Sbjct: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 88

[Close]

BLAST of CsaV3_6G017250 vs. NCBI nr
Match: XP_008458456.1 (PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-30
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60
          MSY ILEMNVI VEGLEE   ISSPNLSVYVMV+LKGASLK+QNANT+MVEGGQNP WN+
Sbjct: 1  MSYLILEMNVISVEGLEEF--ISSPNLSVYVMVILKGASLKEQNANTHMVEGGQNPIWNF 60

Query: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 89
           VKF ID SKQIQALKS LMF+IISKNN
Sbjct: 61 AVKFFIDRSKQIQALKSLLMFSIISKNN 86

[Close]

BLAST of CsaV3_6G017250 vs. NCBI nr
Match: KGN47184.1 (hypothetical protein Csa_6G194680 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LEM V   E L++ +   S  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLMSLEMCVESAEDLKKFDDDLSSKMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + +KF+ID +   Q LKS L FTI S+
Sbjct: 61 FPMKFLIDLNAAKQDLKSLLTFTIKSE 87

[Close]

BLAST of CsaV3_6G017250 vs. NCBI nr
Match: XP_008458457.1 (PREDICTED: protein SRC2-like isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LE++V   E L++L+ +SS  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLLSLEISVDSAENLKKLDDLSS-KMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + + F+ID +   Q L S L FTI S+
Sbjct: 61 FPMNFLIDLNAAKQDLNSLLTFTIKSE 86

[Close]

BLAST of CsaV3_6G017250 vs. NCBI nr
Match: XP_008458458.1 (PREDICTED: uncharacterized protein LOC103497859 isoform X2 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LE++V   E L++L+ +SS  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLLSLEISVDSAENLKKLDDLSS-KMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + + F+ID +   Q L S L FTI S+
Sbjct: 61 FPMNFLIDLNAAKQDLNSLLTFTIKSE 86

[Close]

BLAST of CsaV3_6G017250 vs. TAIR10
Match: AT4G15755.1 (Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASL-KDQNANTNMVE-GGQNPSW 60
          M+   LE+N+     L  +N I+  N  V+  + + G +  K Q A T +   GG NP+W
Sbjct: 1  MANLTLELNINSARNLLNVNLITKMN--VFTAITINGENTRKKQKAKTTVDRYGGSNPTW 60

Query: 61 NYTVKFVIDTSKQIQALKSQLMFTIISK 87
          N T+KF +D  +  +   S L+  +IS+
Sbjct: 61 NQTIKFSVD-ERSARGGHSSLVMRVISR 85

[Close]

BLAST of CsaV3_6G017250 vs. Swiss-Prot
Match: sp|O04133|SRC2_SOYBN (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M Y  LE+N+I  + ++ +N  S   + VY  V L G  L  Q A T++  + G NP+WN
Sbjct: 3  MEYRTLELNIISAKDIKNVNLFS--KMDVYAAVSLSGDPLHPQGATTHVHKDAGSNPTWN 62

Query: 61 YTVKFVIDTS 70
          Y VKF ++ S
Sbjct: 63 YPVKFSVNES 70

[Close]

BLAST of CsaV3_6G017250 vs. TrEMBL
Match: tr|A0A0A0KHD7|A0A0A0KHD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194700 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60
          MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY
Sbjct: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60

Query: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 89
          TVKFVIDTSKQIQALKSQLMFTIISKNN
Sbjct: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 88

[Close]

BLAST of CsaV3_6G017250 vs. TrEMBL
Match: tr|A0A1S3C7E1|A0A1S3C7E1_CUCME (uncharacterized protein LOC103497858 OS=Cucumis melo OX=3656 GN=LOC103497858 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-30
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNMVEGGQNPSWNY 60
          MSY ILEMNVI VEGLEE   ISSPNLSVYVMV+LKGASLK+QNANT+MVEGGQNP WN+
Sbjct: 1  MSYLILEMNVISVEGLEEF--ISSPNLSVYVMVILKGASLKEQNANTHMVEGGQNPIWNF 60

Query: 61 TVKFVIDTSKQIQALKSQLMFTIISKNN 89
           VKF ID SKQIQALKS LMF+IISKNN
Sbjct: 61 AVKFFIDRSKQIQALKSLLMFSIISKNN 86

[Close]

BLAST of CsaV3_6G017250 vs. TrEMBL
Match: tr|A0A0A0KEB7|A0A0A0KEB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LEM V   E L++ +   S  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLMSLEMCVESAEDLKKFDDDLSSKMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + +KF+ID +   Q LKS L FTI S+
Sbjct: 61 FPMKFLIDLNAAKQDLKSLLTFTIKSE 87

[Close]

BLAST of CsaV3_6G017250 vs. TrEMBL
Match: tr|A0A1S3C7W3|A0A1S3C7W3_CUCME (uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LE++V   E L++L+ +SS  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLLSLEISVDSAENLKKLDDLSS-KMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + + F+ID +   Q L S L FTI S+
Sbjct: 61 FPMNFLIDLNAAKQDLNSLLTFTIKSE 86

[Close]

BLAST of CsaV3_6G017250 vs. TrEMBL
Match: tr|A0A1S3C803|A0A1S3C803_CUCME (protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MSYFILEMNVICVEGLEELNQISSPNLSVYVMVLLKGASLKDQNANTNM-VEGGQNPSWN 60
          M    LE++V   E L++L+ +SS  + VYV+V +      +Q A TN+ +EGG+NP WN
Sbjct: 1  MDLLSLEISVDSAENLKKLDDLSS-KMKVYVVVSVTSGVFSEQRAQTNVDMEGGENPRWN 60

Query: 61 YTVKFVIDTSKQIQALKSQLMFTIISK 87
          + + F+ID +   Q L S L FTI S+
Sbjct: 61 FPMNFLIDLNAAKQDLNSLLTFTIKSE 86

The following BLAST results are available for this feature:

BLAST of CsaV3_6G017250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47186.1	1.6e-40	100.00	hypothetical protein Csa_6G194700 [Cucumis sativus]	[more]
XP_008458456.1	9.9e-30	82.95	PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo]	[more]
KGN47184.1	5.3e-07	41.38	hypothetical protein Csa_6G194680 [Cucumis sativus]	[more]
XP_008458457.1	2.6e-06	40.23	PREDICTED: protein SRC2-like isoform X1 [Cucumis melo]	[more]
XP_008458458.1	2.6e-06	40.23	PREDICTED: uncharacterized protein LOC103497859 isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_6G017250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15755.1	1.0e-04	31.82	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

BLAST of CsaV3_6G017250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04133\|SRC2_SOYBN	2.0e-05	38.57	Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1	[more]

BLAST of CsaV3_6G017250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHD7\|A0A0A0KHD7_CUCSA	1.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194700 PE=4 SV=1	[more]
tr\|A0A1S3C7E1\|A0A1S3C7E1_CUCME	6.6e-30	82.95	uncharacterized protein LOC103497858 OS=Cucumis melo OX=3656 GN=LOC103497858 PE=...	[more]
tr\|A0A0A0KEB7\|A0A0A0KEB7_CUCSA	3.5e-07	41.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1	[more]
tr\|A0A1S3C7W3\|A0A1S3C7W3_CUCME	1.7e-06	40.23	uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C803\|A0A1S3C803_CUCME	1.7e-06	40.23	protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom
IPR035892	C2_domain_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G017250.1	CsaV3_6G017250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035892	C2 domain superfamily	GENE3D	G3DSA:2.60.40.150		coord: 4..88 e-value: 5.1E-7 score: 31.7
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 5..86 e-value: 1.3E-5 score: 25.3
None	No IPR available	SUPERFAMILY	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 3..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G017250	MELO3C021338	Melon (DHL92) v3.5.1	cucmeB450

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G017250	Silver-seed gourd	carcucB0088
CsaV3_6G017250	Silver-seed gourd	carcucB0743
CsaV3_6G017250	Cucumber (Gy14) v2	cgybcucB153
CsaV3_6G017250	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G017250	Cucumber (Gy14) v1	cgycucB275
CsaV3_6G017250	Cucumber (Gy14) v1	cgycucB397
CsaV3_6G017250	Cucurbita maxima (Rimu)	cmacucB0453
CsaV3_6G017250	Cucurbita maxima (Rimu)	cmacucB0999
CsaV3_6G017250	Cucurbita maxima (Rimu)	cmacucB1076
CsaV3_6G017250	Cucurbita moschata (Rifu)	cmocucB0306
CsaV3_6G017250	Cucurbita moschata (Rifu)	cmocucB0446
CsaV3_6G017250	Cucurbita moschata (Rifu)	cmocucB0986
CsaV3_6G017250	Cucurbita moschata (Rifu)	cmocucB1058
CsaV3_6G017250	Cucurbita pepo (Zucchini)	cpecucB0177
CsaV3_6G017250	Cucurbita pepo (Zucchini)	cpecucB0407
CsaV3_6G017250	Cucurbita pepo (Zucchini)	cpecucB0783
CsaV3_6G017250	Cucurbita pepo (Zucchini)	cpecucB1073
CsaV3_6G017250	Wild cucumber (PI 183967)	cpicucB188
CsaV3_6G017250	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G017250	Bottle gourd (USVL1VR-Ls)	cuclsiB426
CsaV3_6G017250	Bottle gourd (USVL1VR-Ls)	cuclsiB494
CsaV3_6G017250	Melon (DHL92) v3.5.1	cucmeB510
CsaV3_6G017250	Melon (DHL92) v3.6.1	cucmedB441
CsaV3_6G017250	Melon (DHL92) v3.6.1	cucmedB498
CsaV3_6G017250	Watermelon (Charleston Gray)	cucwcgB499
CsaV3_6G017250	Watermelon (97103) v1	cucwmB523
CsaV3_6G017250	Watermelon (97103) v1	cucwmB566
CsaV3_6G017250	Watermelon (97103) v2	cucwmbB485
CsaV3_6G017250	Watermelon (97103) v2	cucwmbB489
CsaV3_6G017250	Wax gourd	cucwgoB554
CsaV3_6G017250	Wax gourd	cucwgoB577
CsaV3_6G017250	Cucumber (Chinese Long) v3	cuccucB150