CsaV3_6G017200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G017200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S21
Locationchr6 : 12771046 .. 12773599 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGGAATGTATAAAAATCAACATTGGGCCGCATAACGGCCCAAAAGAGATATATCATTTCGGCCCAAAAGTTATATATATATATAGCATTTTAGGTTTTTGATCAAACCCTAGTTCTCTTCCTTACCTTTGCTGCCGACTGGTATTAACTATTGGACTTTTTCCCGATTCCTCTAGCTGTTTGTTCATTCGTATGTGTGTTAGAAGTTAAATTTCTTGGCGTTAATTCATCGTTTACTTGCCGAAGCAGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAAGTGGTGCGTAATCAACCTATTCTTCTTGATTTTTTTTTTTACTATTTCTTAGAACTCTTTTACGAATTTTGTTTGTGATATGTTATTTCAGCTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCTCTATGTATAATATTGGCTGCACTTTTTCTTGTTTATTATGTGATTTTTTTAACCACTGGCTGCTTCACTCGCTTCTAAGCATTGTATTATTGGAATTGCTTTCTGTATGTCCATAACTTGATTTATTGTATGAATCGGTAAGGATAATTTTGTGTATGTGTTTATTTCGAATTTAGTTGCTAACCTAAATATTGTTCATGATTTGATGTGCTTCATTTTTATTTTTAAGATTTACATTCTTAGGAAGTTTTCTGTTGACCACTCTTATCATCCATTCAACTATTTTATCTGAGGACTCACAAATCAGCTAATATCCCAAGCCTTGCCGAAATCTTCACATTCGTCAAACCTTGGTCTATAATATTTAATCTTTAATTTAGCTCTCCAGAGAAATCATTATAGCATAGAAAGGAAACGGAAGAGAAATTATGTATTAGTATCATTGATTACAGTTTTTAAATGATATGAAATCATTTAACGGATAGGAAAAGGATCAGATTTGATTCTTATATTTGATTACGATCTCACTCGAACACAGGATGTCATAGAGGTTCTACAAATACGTCCTTTATTTTTGAAGATTCGAGTACGTTGATTTAACATACACAATTCGTGTATGATGTTGATTGTATTACCTTGTGTACTATCTTTCATATGAACATGTGAAGATAATTTTCAACATATAAATTTTTGCAAGGATGGATTTTGATATTTTGAAGTATATCAATTTAGTCTTTTGACATCATTGTTTCCTCCACACAAAATCTCATTGAAGTTAGCGGGTAAAGTTTTACATTAATTACTGTCACAATTCTCAAAAACTTGTTTGTCATACTTCGTACATATTCAGGTATGATTGTTTGAAATCCAAATGTTCTCATTGTAGAGGATAAATAAAACTTAAAGGTTTGGAAACTAAATGAATACTTGTTTGTTTTATAACACGAAGATCGTGTATGTCACGAGTATTAATTTTTAGTATATACAACGAAGTTAATCTCTTGGCTCGATATTTATTCGACAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAATATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTGGTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGTGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTTTACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAGAATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTGTGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGATCTCTTCTATTATCTTCTCTAATAAATTAAAGGGGTGTTGTTTGGGAGTTGAAATGTACCAAAGCATCCCATGTAAATATGGGCTTGGAATTCTCATCTCTCGAACGTAACTTCCAACAGTAGAAAAAGCCAAGTGAAGCTGCTTCTTTCAGAATCCATATGTTAAAATCCATGTGGAAGAGATCAAAAGGGAAAGAAATTGGAGTGTAGGAAACATGGAATTTCGGAAAAATCATCATTCTTTCTCTCTTTCTAACAGTCTCAATGATGGTTGCGCGTTGTGTAAGAGGCAACGGAGGCAACGAAAATAGAGAAAAAAACGTAAAATTAGACCACAAAATCAATGGATGTGAACTTCCTGATGCATTAAATATGTGTCTTACCCTAAAAGTGTTGGTAAAGGCAGATTCGGTTGAAAGTTCAAAAAACTTCTATTTCAC

mRNA sequence

ATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAG

Coding sequence (CDS)

ATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAG

Protein sequence

MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Homology
[Close]
BLAST of CsaV3_6G017200 vs. NCBI nr
Match: XP_004143089.1 (PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus] >KGN47181.1 hypothetical protein Csa_6G194160 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. NCBI nr
Match: XP_022138832.1 (40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138834.1 40S ribosomal protein S21-2-like [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 4.9e-39
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. NCBI nr
Match: XP_008438883.1 (PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_004134210.2 PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >KGN57104.1 hypothetical protein Csa_3G154280 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.4e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. NCBI nr
Match: XP_022930553.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_023513574.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. TAIR10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 154.5 bits (389), Expect = 3.0e-38
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 82
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of CsaV3_6G017200 vs. TAIR10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 151.0 bits (380), Expect = 3.3e-37
Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match: sp|Q3E902|RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-37
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 82
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match: sp|Q9M337|RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-36
Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match: sp|P35687|RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-35
Identity = 67/82 (81.71%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQK+KAEV+QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match: sp|Q41852|RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-34
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 82
          QGDADS+LDRLWQKKKAE++Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match: sp|Q9SMI2|RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-25
Identity = 51/75 (68.00%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIR 60
          MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRLWQK 75
          + G++D+AL+RL  K
Sbjct: 61 SMGESDAALNRLCVK 75

[Close]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match: tr|A0A0A0KHD3|A0A0A0KHD3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match: tr|A0A1S4DSM1|A0A1S4DSM1_CUCME (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match: tr|A0A0A0L7W3|A0A0A0L7W3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match: tr|A0A2P5FNL5|A0A2P5FNL5_9ROSA (40S ribosomal protein S21 OS=Trema orientalis OX=63057 GN=TorRG33x02_049280 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.1e-38
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCGF+RA
Sbjct: 1  MQNEEGVITELYIPRKCSATNRLITSKDHASVQINVGHLDENGVYTGQFSTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADS LDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSGLDRLWQKKKAEVRQQ 82

[Close]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match: tr|A0A2P5AZG9|A0A2P5AZG9_PARAD (40S ribosomal protein S21 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_285820 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.1e-38
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG ITELYIPRKCSATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCGF+RA
Sbjct: 1  MQNEEGVITELYIPRKCSATNRLITSKDHASVQINVGHLDENGVYTGQFSTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 83
          QGDADS LDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSGLDRLWQKKKAEVRQQ 82

The following BLAST results are available for this feature:
BLAST of CsaV3_6G017200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143089.12.2e-39100.00PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus] >KGN47181.1 hypothetica... [more]
XP_022138832.14.9e-3998.7840S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribos... [more]
XP_008438883.16.4e-3998.78PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED:... [more]
XP_022138287.11.4e-3897.5640S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ... [more]
XP_022930553.11.9e-3896.3440S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S riboso... [more]
BLAST of CsaV3_6G017200 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27700.13.0e-3885.19Ribosomal protein S21e [more]
AT3G53890.13.3e-3780.49Ribosomal protein S21e [more]
BLAST of CsaV3_6G017200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3E902|RS212_ARATH5.3e-3785.1940S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2[more]
sp|Q9M337|RS211_ARATH5.9e-3680.4940S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1[more]
sp|P35687|RS21_ORYSJ1.7e-3581.7140S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3... [more]
sp|Q41852|RS21_MAIZE1.9e-3480.2540S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1[more]
sp|Q9SMI2|RS21_CYAPA2.7e-2568.0040S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1[more]
BLAST of CsaV3_6G017200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHD3|A0A0A0KHD3_CUCSA1.5e-39100.0040S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1[more]
tr|A0A1S4DSM1|A0A1S4DSM1_CUCME4.2e-3998.7840S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1[more]
tr|A0A0A0L7W3|A0A0A0L7W3_CUCSA4.2e-3998.7840S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1[more]
tr|A0A2P5FNL5|A0A2P5FNL5_9ROSA6.1e-3893.9040S ribosomal protein S21 OS=Trema orientalis OX=63057 GN=TorRG33x02_049280 PE=3... [more]
tr|A0A2P5AZG9|A0A2P5AZG9_PARAD6.1e-3893.9040S ribosomal protein S21 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_285820 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018279Ribosomal_S21e_CS
IPR001931Ribosomal_S21e
IPR038579Ribosomal_S21e_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G017200.1CsaV3_6G017200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038579Ribosomal protein S21e superfamilyGENE3DG3DSA:3.30.1230.20coord: 1..81
e-value: 9.3E-39
score: 133.1
IPR001931Ribosomal protein S21ePIRSFPIRSF002148RPS21ecoord: 1..82
e-value: 1.9E-38
score: 128.4
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 1..76
e-value: 3.3E-38
score: 129.5
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 1..82
IPR001931Ribosomal protein S21ePRODOMPD006584coord: 26..74
e-value: 9.0E-21
score: 241.0
NoneNo IPR availablePANTHERPTHR10442:SF740S RIBOSOMAL PROTEIN S21-1-RELATEDcoord: 1..82
IPR018279Ribosomal protein S21e, conserved sitePROSITEPS00996RIBOSOMAL_S21Ecoord: 11..19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G017200CSPI06G14750Wild cucumber (PI 183967)cpicucB364
CsaV3_6G017200CSPI03G14390Wild cucumber (PI 183967)cpicucB188
CsaV3_6G017200Cucsa.172240Cucumber (Gy14) v1cgycucB275
CsaV3_6G017200Cucsa.253110Cucumber (Gy14) v1cgycucB397
CsaV3_6G017200CmaCh08G012250Cucurbita maxima (Rimu)cmacucB1076
CsaV3_6G017200CmaCh17G003230Cucurbita maxima (Rimu)cmacucB0453
CsaV3_6G017200CmaCh06G014980Cucurbita maxima (Rimu)cmacucB0999
CsaV3_6G017200CmoCh06G014940Cucurbita moschata (Rifu)cmocucB0986
CsaV3_6G017200CmoCh08G011990Cucurbita moschata (Rifu)cmocucB1058
CsaV3_6G017200CmoCh14G016580Cucurbita moschata (Rifu)cmocucB0306
CsaV3_6G017200CmoCh17G003100Cucurbita moschata (Rifu)cmocucB0446
CsaV3_6G017200Cp4.1LG17g00550Cucurbita pepo (Zucchini)cpecucB0407
CsaV3_6G017200Cp4.1LG12g02760Cucurbita pepo (Zucchini)cpecucB0177
CsaV3_6G017200Cp4.1LG08g05050Cucurbita pepo (Zucchini)cpecucB1073
CsaV3_6G017200CsGy3G014530Cucumber (Gy14) v2cgybcucB153
CsaV3_6G017200CsGy6G014620Cucumber (Gy14) v2cgybcucB298
CsaV3_6G017200Carg05501Silver-seed gourdcarcucB0088
CsaV3_6G017200Carg18841Silver-seed gourdcarcucB0743
CsaV3_6G017200Cla021737Watermelon (97103) v1cucwmB523
CsaV3_6G017200Cla009306Watermelon (97103) v1cucwmB566
CsaV3_6G017200MELO3C021332Melon (DHL92) v3.5.1cucmeB450
CsaV3_6G017200MELO3C006662Melon (DHL92) v3.5.1cucmeB510
CsaV3_6G017200ClCG06G005150Watermelon (Charleston Gray)cucwcgB499
CsaV3_6G017200Lsi09G014260Bottle gourd (USVL1VR-Ls)cuclsiB426
CsaV3_6G017200Lsi05G015370Bottle gourd (USVL1VR-Ls)cuclsiB494
CsaV3_6G017200MELO3C006662.2Melon (DHL92) v3.6.1cucmedB498
CsaV3_6G017200MELO3C021332.2Melon (DHL92) v3.6.1cucmedB441
CsaV3_6G017200Cla97C05G087560Watermelon (97103) v2cucwmbB485
CsaV3_6G017200Cla97C06G114650Watermelon (97103) v2cucwmbB489
CsaV3_6G017200Bhi12G001828Wax gourdcucwgoB554
CsaV3_6G017200Bhi01G000712Wax gourdcucwgoB577
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_6G017200CsaV3_3G014610Cucumber (Chinese Long) v3cuccucB150
The following block(s) are covering this gene:

None