CsaV3_6G016840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G016840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 12575670 .. 12575948 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

mRNA sequence

ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

Coding sequence (CDS)

ATGGGATTGGATAGGCATTCCGCTTTTGACTTTTCTATCATTGGATTGAACTCGAAGGAAATGCCTCGATCATGGGAACTTGTTTTCAAGCTAAGGTCCACATGTACGTCCCAATCAAGCGGGCAGAAACCACCATTTCAATGGAGGGGAGCGGAGGAAAGGAATCAAGAATTAAAGGGACGGCTCTCTGTCGGCGGCTCAAAACTCTCCGGCGAGCGAGCCGTCAATCGACTGGCAAGTGGCAAAGGTCAAGTTGCGATAGCCGCTCTGTTGACTTGA

Protein sequence

MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKGRLSVGGSKLSGERAVNRLASGKGQVAIAALLT
Homology
[Close]
BLAST of CsaV3_6G016840 vs. NCBI nr
Match: KGN47149.1 (hypothetical protein Csa_6G190400 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG
Sbjct: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
          RLSVGGSKLSGERAVNRLASGKGQVAIAALLT
Sbjct: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 92

[Close]
BLAST of CsaV3_6G016840 vs. TrEMBL
Match: tr|A0A0A0KE89|A0A0A0KE89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60
          MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG
Sbjct: 1  MGLDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKG 60

Query: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 93
          RLSVGGSKLSGERAVNRLASGKGQVAIAALLT
Sbjct: 61 RLSVGGSKLSGERAVNRLASGKGQVAIAALLT 92

The following BLAST results are available for this feature:
BLAST of CsaV3_6G016840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47149.13.7e-43100.00hypothetical protein Csa_6G190400 [Cucumis sativus][more]
BLAST of CsaV3_6G016840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G016840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G016840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KE89|A0A0A0KE89_CUCSA2.4e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G016840.1CsaV3_6G016840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G016840CSPI06G14440Wild cucumber (PI 183967)cpicucB364
CsaV3_6G016840MELO3C025915Melon (DHL92) v3.5.1cucmeB445
CsaV3_6G016840MELO3C025915.2Melon (DHL92) v3.6.1cucmedB436
CsaV3_6G016840Bhi10G000569Wax gourdcucwgoB626
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G016840Wax gourdcucwgoB548
CsaV3_6G016840Wax gourdcucwgoB655
CsaV3_6G016840Cucumber (Chinese Long) v3cuccucB049
CsaV3_6G016840Cucumber (Chinese Long) v3cuccucB142
CsaV3_6G016840Cucumber (Chinese Long) v3cuccucB182
CsaV3_6G016840Cucumber (Chinese Long) v3cuccucB207
CsaV3_6G016840Silver-seed gourdcarcucB0188
CsaV3_6G016840Silver-seed gourdcarcucB0340
CsaV3_6G016840Silver-seed gourdcarcucB0374
CsaV3_6G016840Silver-seed gourdcarcucB0416
CsaV3_6G016840Silver-seed gourdcarcucB0477
CsaV3_6G016840Silver-seed gourdcarcucB1044
CsaV3_6G016840Cucumber (Gy14) v2cgybcucB048
CsaV3_6G016840Cucumber (Gy14) v2cgybcucB192
CsaV3_6G016840Cucumber (Gy14) v2cgybcucB298
CsaV3_6G016840Cucumber (Gy14) v1cgycucB062
CsaV3_6G016840Cucumber (Gy14) v1cgycucB209
CsaV3_6G016840Cucumber (Gy14) v1cgycucB286
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0264
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0312
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0582
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0665
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0740
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB0998
CsaV3_6G016840Cucurbita maxima (Rimu)cmacucB1038
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0253
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0307
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0571
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0650
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0729
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB0983
CsaV3_6G016840Cucurbita moschata (Rifu)cmocucB1022
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0359
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0620
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0653
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0721
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0781
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB0933
CsaV3_6G016840Cucurbita pepo (Zucchini)cpecucB1080
CsaV3_6G016840Wild cucumber (PI 183967)cpicucB055
CsaV3_6G016840Wild cucumber (PI 183967)cpicucB243
CsaV3_6G016840Bottle gourd (USVL1VR-Ls)cuclsiB438
CsaV3_6G016840Bottle gourd (USVL1VR-Ls)cuclsiB464
CsaV3_6G016840Bottle gourd (USVL1VR-Ls)cuclsiB467
CsaV3_6G016840Bottle gourd (USVL1VR-Ls)cuclsiB479
CsaV3_6G016840Melon (DHL92) v3.5.1cucmeB462
CsaV3_6G016840Melon (DHL92) v3.5.1cucmeB500
CsaV3_6G016840Melon (DHL92) v3.5.1cucmeB524
CsaV3_6G016840Melon (DHL92) v3.6.1cucmedB487
CsaV3_6G016840Melon (DHL92) v3.6.1cucmedB512
CsaV3_6G016840Watermelon (Charleston Gray)cucwcgB451
CsaV3_6G016840Watermelon (Charleston Gray)cucwcgB457
CsaV3_6G016840Watermelon (Charleston Gray)cucwcgB481
CsaV3_6G016840Watermelon (Charleston Gray)cucwcgB487
CsaV3_6G016840Watermelon (97103) v1cucwmB480
CsaV3_6G016840Watermelon (97103) v1cucwmB504
CsaV3_6G016840Watermelon (97103) v1cucwmB532
CsaV3_6G016840Watermelon (97103) v1cucwmB536
CsaV3_6G016840Watermelon (97103) v2cucwmbB440
CsaV3_6G016840Watermelon (97103) v2cucwmbB445
CsaV3_6G016840Watermelon (97103) v2cucwmbB468
CsaV3_6G016840Watermelon (97103) v2cucwmbB475
CsaV3_6G016840Watermelon (97103) v2cucwmbB503