CsaV3_6G016170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G016170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSelT-like protein
Locationchr6 : 12111179 .. 12112399 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTAATAATGCATTTCGTTTTGGTAAATATGCTCAATCGTTCGCTTCTGTTGAGTTTGATTCTTTGGTTCTAATTTGATTAATCCGTGTGAATTTGTTGGAGTTGAAGTCACGGTGAAACGATTTTTAGGGAAATTTGAATCGTGAGAAAAGGCTCAACTTAGATAAAAAATTTATACTTATCCAAATTCTAATAATTTAAGTTTATAAATACATTTTCTGTTTCTGAATATTTTCAAAATCCAAACAAGTTTTTAAGACTAAAAAAAAAAAGTATTTTTTTTTAAAAAAACTAATTAATTAATTTGTTGCTGTATTTGACATTTGAGTAAGAATTCAAAACTGATTTTGTTACCATAACGAACTTTAATATCTTTTCTAGATACAACTTAATTTTTAGTTGTATTGTATGTCTAATTGATTTATTGATTTTTTGAAATGTTAAATAAGCCAAGGACATATTAAATAGAAAATTGAAAGTTGAAGTACCCATTTAAATTATTAAAGTTTATAACGAACAAAACACGTCCACCTTCTTTTTCTTTGAAAAATAAACATTATTAAACCACAAGTAAAATTACAATCAAATTTCTCACGAAGAAGAATAGACGACACCCAATTAGGATAAAGTGACAAAATCCCAAAGGCTTCCACACCTTCAGGGGAAAGAAGGAATGAATCAAAACATGTAATCCAGAAACTCATTGCACTAAGGTATTGCCACATCAATTAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTACTGAAAGTTGTCCTTGCTTGTATCTACATTTTTAGAAATGATTCTTAAGAATCAGATTTCATTTCCTTTTGTTTTCTCTATTGTTCAGGTGTTCTGTAAATAG

mRNA sequence

ATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTGTTCTGTAAATAG

Coding sequence (CDS)

ATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTGTTCTGTAAATAG

Protein sequence

MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHINSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLVFCK
Homology
[Close]
BLAST of CsaV3_6G016170 vs. NCBI nr
Match: KGN47075.1 (hypothetical protein Csa_6G185250 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.4e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60
           MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI
Sbjct: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60

Query: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120
           NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF
Sbjct: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120

Query: 121 QLFFNDNLVFCK 133
           QLFFNDNLVFCK
Sbjct: 121 QLFFNDNLVFCK 132

[Close]
BLAST of CsaV3_6G016170 vs. NCBI nr
Match: XP_022148433.1 (selT-like protein [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 9.3e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 71  VMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLVF 130
           VMAG +IL E+  PIP WY+ L A +F+++AIPWLLG I INYL++TE F+++FND LVF
Sbjct: 148 VMAGGYILAEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVF 207

Query: 131 CK 133
           CK
Sbjct: 208 CK 209

[Close]
BLAST of CsaV3_6G016170 vs. NCBI nr
Match: XP_007205839.1 (selT-like protein [Prunus persica] >ONH99884.1 hypothetical protein PRUPE_6G055700 [Prunus persica])

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

[Close]
BLAST of CsaV3_6G016170 vs. NCBI nr
Match: XP_008221145.1 (PREDICTED: selT-like protein [Prunus mume])

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

[Close]
BLAST of CsaV3_6G016170 vs. NCBI nr
Match: ONK77055.1 (uncharacterized protein A4U43_C02F2630 [Asparagus officinalis])

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 71  VMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLVF 130
           +M G+HI   LG P P WY+SL A +F  +A  WLLG    ++L+S+  F+++ N  LVF
Sbjct: 151 IMGGEHIFPRLGMPPPQWYHSLRANRFGSMATTWLLGNFAQSFLQSSGAFEVYCNRELVF 210

Query: 131 CK 133
            K
Sbjct: 211 SK 212

[Close]
BLAST of CsaV3_6G016170 vs. TrEMBL
Match: tr|A0A0A0KBM2|A0A0A0KBM2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185250 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.6e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60
           MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI
Sbjct: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60

Query: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120
           NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF
Sbjct: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120

Query: 121 QLFFNDNLVFCK 133
           QLFFNDNLVFCK
Sbjct: 121 QLFFNDNLVFCK 132

[Close]
BLAST of CsaV3_6G016170 vs. TrEMBL
Match: tr|M5WCM6|M5WCM6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G055700 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

[Close]
BLAST of CsaV3_6G016170 vs. TrEMBL
Match: tr|A0A218W373|A0A218W373_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010342 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 71  VMAGKHILLELGRPI-PSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           +MAG HI   +G  + P WYYSL A +F  +A  WLLG +  ++L+S+  F+++ ND LV
Sbjct: 129 IMAGDHIFPMIGFAVPPPWYYSLRANRFGTIASTWLLGNVVQSFLQSSGAFEVYCNDELV 188

Query: 131 FCK 133
           F K
Sbjct: 189 FSK 191

[Close]
BLAST of CsaV3_6G016170 vs. TrEMBL
Match: tr|A0A2G5CN56|A0A2G5CN56_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500113v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+ I   LG    P WYYS+   +F  +A  WLLG +  +YL+S+  F+++FND LV
Sbjct: 235 VMAGEQIFPRLGYMTPPPWYYSMRQNRFGTIATAWLLGNVMQSYLQSSGAFEVYFNDELV 294

Query: 131 FCK 133
           F K
Sbjct: 295 FSK 297

[Close]
BLAST of CsaV3_6G016170 vs. TrEMBL
Match: tr|A0A2I0B679|A0A2I0B679_9ASPA (SelT-like protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017777 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 71  VMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLVF 130
           + AG+HI  +LG   P WYY+L A +F  +A  WLLG    + L+S+  F+++FN  LVF
Sbjct: 128 ITAGEHIFPKLGMVPPPWYYTLRANRFGAIASTWLLGNFVQSSLQSSGAFEVYFNGELVF 187

Query: 131 CK 133
            K
Sbjct: 188 SK 189

The following BLAST results are available for this feature:
BLAST of CsaV3_6G016170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47075.15.4e-72100.00hypothetical protein Csa_6G185250 [Cucumis sativus][more]
XP_022148433.19.3e-1661.29selT-like protein [Momordica charantia][more]
XP_007205839.13.0e-0649.21selT-like protein [Prunus persica] >ONH99884.1 hypothetical protein PRUPE_6G0557... [more]
XP_008221145.13.0e-0649.21PREDICTED: selT-like protein [Prunus mume][more]
ONK77055.13.0e-0643.55uncharacterized protein A4U43_C02F2630 [Asparagus officinalis][more]
BLAST of CsaV3_6G016170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G016170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G016170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBM2|A0A0A0KBM2_CUCSA3.6e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185250 PE=4 SV=1[more]
tr|M5WCM6|M5WCM6_PRUPE2.0e-0649.21Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G055700 PE=4 SV=1[more]
tr|A0A218W373|A0A218W373_PUNGR2.6e-0644.44Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010342 PE=4 SV=1[more]
tr|A0A2G5CN56|A0A2G5CN56_AQUCA2.6e-0646.03Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500113v1 PE=4... [more]
tr|A0A2I0B679|A0A2I0B679_9ASPA4.4e-0643.55SelT-like protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017777 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G016170.1CsaV3_6G016170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G016170Lsi10G014390Bottle gourd (USVL1VR-Ls)cuclsiB438
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G016170Cucumber (Chinese Long) v3cuccucB205
CsaV3_6G016170Silver-seed gourdcarcucB0374
CsaV3_6G016170Silver-seed gourdcarcucB0550
CsaV3_6G016170Cucumber (Gy14) v2cgybcucB244
CsaV3_6G016170Cucumber (Gy14) v2cgybcucB298
CsaV3_6G016170Cucumber (Gy14) v1cgycucB209
CsaV3_6G016170Cucurbita maxima (Rimu)cmacucB0665
CsaV3_6G016170Cucurbita maxima (Rimu)cmacucB0740
CsaV3_6G016170Cucurbita moschata (Rifu)cmocucB0650
CsaV3_6G016170Cucurbita moschata (Rifu)cmocucB0729
CsaV3_6G016170Cucurbita pepo (Zucchini)cpecucB0359
CsaV3_6G016170Cucurbita pepo (Zucchini)cpecucB0565
CsaV3_6G016170Cucurbita pepo (Zucchini)cpecucB0566
CsaV3_6G016170Cucurbita pepo (Zucchini)cpecucB0933
CsaV3_6G016170Wild cucumber (PI 183967)cpicucB308
CsaV3_6G016170Wild cucumber (PI 183967)cpicucB364
CsaV3_6G016170Melon (DHL92) v3.5.1cucmeB445
CsaV3_6G016170Melon (DHL92) v3.6.1cucmedB436
CsaV3_6G016170Watermelon (Charleston Gray)cucwcgB457
CsaV3_6G016170Watermelon (Charleston Gray)cucwcgB512
CsaV3_6G016170Watermelon (97103) v1cucwmB515
CsaV3_6G016170Watermelon (97103) v1cucwmB536
CsaV3_6G016170Watermelon (97103) v2cucwmbB445
CsaV3_6G016170Watermelon (97103) v2cucwmbB502
CsaV3_6G016170Wax gourdcucwgoB626
CsaV3_6G016170Wax gourdcucwgoB661