CsaV3_6G015500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G015500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 11454171 .. 11454840 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTGTCTCTTTAAGATAATGGTAGTGAAACTTACGTCTCCAAAATGATGGTGGTGCAGCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGTGGTGTAAATTCACCTTTCCAAGATGGTGGTGGTTTTGCCTCTCCAAAAGGATGATGGGATAGTCCACCTCTCCAAGATGTTAATAGTGCAGCTCCGCCTCTTCAAAATGATTCTAATGTAGCTTCCATTTCTCTAGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

mRNA sequence

ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

Coding sequence (CDS)

ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

Protein sequence

MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVVQLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGGAASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL
Homology
[Close]
BLAST of CsaV3_6G015500 vs. NCBI nr
Match: KGN47004.1 (hypothetical protein Csa_6G167220 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX 60
           MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX
Sbjct: 1   MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG 120

Query: 121 AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL 159
           AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL
Sbjct: 121 AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL 158

[Close]
BLAST of CsaV3_6G015500 vs. TrEMBL
Match: tr|A0A0A0KDX7|A0A0A0KDX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G167220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-22
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX 60
           MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX
Sbjct: 1   MVVVQLYFSNMVLSKMXXXXXXXXXXXXXXXXXXXXXXXXXXSPLQDDGDETHLXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMVHCLRLSKMMDGILQDSGG 120

Query: 121 AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL 159
           AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL
Sbjct: 121 AASPLQNDNDGVAXXXXXXXXXXXXXXXXQNEDVVQHL 158

The following BLAST results are available for this feature:
BLAST of CsaV3_6G015500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47004.11.0e-21100.00hypothetical protein Csa_6G167220 [Cucumis sativus][more]
BLAST of CsaV3_6G015500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G015500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G015500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDX7|A0A0A0KDX7_CUCSA6.9e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G167220 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G015500.1CsaV3_6G015500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G015500CSPI06G13020Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G015500Cucumber (Chinese Long) v3cuccucB211
CsaV3_6G015500Silver-seed gourdcarcucB0027
CsaV3_6G015500Silver-seed gourdcarcucB0377
CsaV3_6G015500Silver-seed gourdcarcucB0424
CsaV3_6G015500Silver-seed gourdcarcucB0570
CsaV3_6G015500Cucumber (Gy14) v2cgybcucB298
CsaV3_6G015500Cucumber (Gy14) v2cgybcucB303
CsaV3_6G015500Cucurbita maxima (Rimu)cmacucB0163
CsaV3_6G015500Cucurbita maxima (Rimu)cmacucB0630
CsaV3_6G015500Cucurbita maxima (Rimu)cmacucB0668
CsaV3_6G015500Cucurbita maxima (Rimu)cmacucB0754
CsaV3_6G015500Cucurbita moschata (Rifu)cmocucB0145
CsaV3_6G015500Cucurbita moschata (Rifu)cmocucB0616
CsaV3_6G015500Cucurbita moschata (Rifu)cmocucB0652
CsaV3_6G015500Cucurbita moschata (Rifu)cmocucB0743
CsaV3_6G015500Cucurbita pepo (Zucchini)cpecucB0314
CsaV3_6G015500Cucurbita pepo (Zucchini)cpecucB0362
CsaV3_6G015500Cucurbita pepo (Zucchini)cpecucB0856
CsaV3_6G015500Cucurbita pepo (Zucchini)cpecucB0923
CsaV3_6G015500Wild cucumber (PI 183967)cpicucB368
CsaV3_6G015500Bottle gourd (USVL1VR-Ls)cuclsiB442
CsaV3_6G015500Bottle gourd (USVL1VR-Ls)cuclsiB456
CsaV3_6G015500Melon (DHL92) v3.5.1cucmeB448
CsaV3_6G015500Melon (DHL92) v3.5.1cucmeB505
CsaV3_6G015500Melon (DHL92) v3.6.1cucmedB422
CsaV3_6G015500Melon (DHL92) v3.6.1cucmedB492
CsaV3_6G015500Watermelon (Charleston Gray)cucwcgB460
CsaV3_6G015500Watermelon (97103) v1cucwmB538
CsaV3_6G015500Watermelon (97103) v2cucwmbB447
CsaV3_6G015500Wax gourdcucwgoB586
CsaV3_6G015500Wax gourdcucwgoB628