CsaV3_6G015390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G015390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 11242514 .. 11245888 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAAGTTCGTAGATCGTAAGTTCTAGCCAACAAGCCTACATTACTTTTTGTTATTTTACTTTTGTCTTTAGCATAAATTAAATCAAGTTTTATTCTAAGTTTATTATAACTTTGCAGCCTCCGGCGTTCAATACCACACTACCTCCTTTAAAACTTGTCACTGTGAACACAATATCGAATACACCCAAATCACTCTTATCTAACAACTATAAGGTAAGTTAAACCATTTTGATGGATGACTTTGTTTTGTATTTATTAATTCAATGCATAGCAAAAAAAAAAAATTTAAGTATTTAAATCATACTTTTGAATTTTTATAACCCAGCTAAGATTTTGAAAATATTTTGGAAAAGCAAACAATAAAACAATGAAATAGTAGGTGAATGTAGTGTTAAACTTCATTTTCAAAATAGAGACCCATTAGACCCAAATAGGAAACAGGTCTCGATTTATTGTTTTCATATTCTTCAAGACTAAGCTTGAAAACATTACTGTTTGCTTATTTATTGTTATATCCAATACTAACTTCTAACAATGTTTTTAAAAAAGTTATATTTGAATTTAAATACAAAATTGAAATAATGGTAATTAAAAAAATTAACAAATATTTTTTATAAAAAGGATAAAATATTATCAAACGAGCTCTTAAAACATATAAACTCTACTTTAATAAATTTCATAAAAAAAATGATGTAAAATTGTGACACATGAAACTAAATGATTGTGTGACATGAATGATTTGACATGCAAATTGAGAAATAGTAGTGAATGACATAAAAAGTAGATGATATTGGATAAAATAAAGTTAGGCGTGCAACGTTAGCATACGTTTTAAAAATGATATACTCAAATTTCATTTTTTTTATTATTTTGATAATATTATGTTTTTTTTCTTACAGAGAGTAAAATATTACATATAACCAAATTCAAAATTCAAAGCAATTAATTTTATGAGGTCCATGGACTATAAATAAAGACGCCATTATTATTTAAGTTATGTGATTCAATTAGTAATATTTAATGATAAATGAAGGAAAATGTGTACTTGAGTCATTATTATATTTTTCTTTGAAAAATCCATACTTTAATATATTCTTATTTATTTTTGTTCTTTACTAGAATTTTCATATTGCACTCAATTAAAACCTAGCATAATCCAAGAGTCACTATTTCCCAAGTTTATGATGTCAGGTTGGAAATAATTATATATCCATCATCCATCATTGTATGAAACACATTTTCTTTCTCATAAATTTATATGGTTGAATTACATTCATGTTAGATACATAATGCAAACTTTTATTAAATGCAAAATTCAACCATGGTTTCAATAATTATTTTATGTTAATTTTAGGAGTTTTTTTTTTATAAAAATAATAGTACTAATAATTTACACATTCATAAAAAATAACCACTAACCACAAATGTATATTTTGAAGGTACTAAATTTAAAAAAATAAAATTATTGGAGGAAATAACTTATATTTTGATGCCCTAATAATTTTCTTTTTTAAAAAAAAGAAAAGAAAAGAAAAATAGTGAGTGTGAGTGTGACATTTAAGAAGTTTCGAGGAAAGAATCAAAGGATCCTTTTTCTTATTTGACAAGTTAACTTTAATTTGGACTTGTTTTAATTTTGACTTAAAACATTTTTGTTACCAAAATTTTGACTATAGAAAATATTTAGTGAACGGAAAATTAGCCAAAAACTGCGCCCTGACGACGAAAATTCAATTCATGCCATCGTGATGAAGACTTATACCTAACACCCATTTCAAATTAGTTTCCTTTTTTGCTTTTCATTAATGTTTAAAACATTAGCTTATAAAGTTTTATAATTAATAATTATCCTTAAAAAATATTTCAAATAAAAAAGTAGGTTATCAATGAAATATATAATTTTTAACTGATTAAATATTTTAAAAACTAATTAAAATATATTATCAAAATGAGTTTAAATGAGTTTATGATATGATTTTACCATCCTAAAAGTGAGAGGTTTGATTTCAATCTCCACAATTGTTGTATTAAAAATTCTAATAAATATATGCTTTCAAAAAGAGGTCAAAGAATTTGTATTGTAATGGCAGATTTTTCTTTAAATCAATAAAGACTTATTTGGAAAAATATTGATTAAATGAAAATAGAGCTTTATTTCATGTTTATATGTTAGATCTGTTTAACAACAAAGTTGGAGAATTGGATTCTAATGGAAATCGTTATTCTTACTATATTAAAAGTGGCTTAGGGGTAATCTATCCCTTGCCAAATTTTATATTAAAACTGATTCTACCCCTGTCAAAGTCTAAATTTACAATATTGTTATTTATGATTATTTAATTAATATAAAAAAATATAATTATCATCACTCGTTTATAATATTTTCAAATTCCCACGTTAATTAATGCATAACCCATTATTTAAGAGATTAAGAAGTTATAATGTGAAAAGTTATATGTTTATTTCTATAATTTACATTTTAAAAAATTATAAATATATTAACACTCTTCTCAAAATGATGCATCAACTCATGAATACTTAGTTGATACTCATAACCATTTATTCCAACAGCACATTCTATCACAAGAACACACAAGAAACAAATTCTAGATTTTAGAATTTTCAGATTTTATTAAGCCAAATTCTTCTTTTAAAATGTGACAATTGCAACCCTATTTAACTAATTAAAATATCAAATGAAAGGTCACAATTTGGCTAGTTCTTCTAATAATCATTTCCTCAAATTTCAATTGATTTTATCAACAATAATGTTGATCCCATTGACAGTTTGAGTACTGATTTTGTTGTTCATGAATATACACAGATTGAACAAGTTGATCACAGCCCTTTAGATGAAGGAAGTACTAATGATGCAACCGTAGTCAGTGATCAACAGACCATGATTCCATGTAATCCATCAGTTTCTCAAAGATCTACTAGACAACATAAGCCTCCAAGTTTCTTGAAGAACTACCATTATCACATGTTGACTCATGGCTCCCCTCCTATAGATACAATTTTATATCATCGTTTTAATAAAAGTGTTGTCTTTTGA

mRNA sequence

ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAACCTCCGGCGTTCAATACCACACTACCTCCTTTAAAACTTGTCACTGTGAACACAATATCGAATACACCCAAATCACTCTTATCTAACAACTATAAGATTGAACAAGTTGATCACAGCCCTTTAGATGAAGGAAGTACTAATGATGCAACCGTAGTCAGTGATCAACAGACCATGATTCCATGTAATCCATCAGTTTCTCAAAGATCTACTAGACAACATAAGCCTCCAAGTTTCTTGAAGAACTACCATTATCACATGTTGACTCATGGCTCCCCTCCTATAGATACAATTTTATATCATCGTTTTAATAAAAGTGTTGTCTTTTGA

Coding sequence (CDS)

ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAACCTCCGGCGTTCAATACCACACTACCTCCTTTAAAACTTGTCACTGTGAACACAATATCGAATACACCCAAATCACTCTTATCTAACAACTATAAGATTGAACAAGTTGATCACAGCCCTTTAGATGAAGGAAGTACTAATGATGCAACCGTAGTCAGTGATCAACAGACCATGATTCCATGTAATCCATCAGTTTCTCAAAGATCTACTAGACAACATAAGCCTCCAAGTTTCTTGAAGAACTACCATTATCACATGTTGACTCATGGCTCCCCTCCTATAGATACAATTTTATATCATCGTTTTAATAAAAGTGTTGTCTTTTGA

Protein sequence

MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRIVSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQPPAFNTTLPPLKLVTVNTISNTPKSLLSNNYKIEQVDHSPLDEGSTNDATVVSDQQTMIPCNPSVSQRSTRQHKPPSFLKNYHYHMLTHGSPPIDTILYHRFNKSVVF
Homology
[Close]
BLAST of CsaV3_6G015390 vs. NCBI nr
Match: KGN46995.1 (hypothetical protein Csa_6G159180 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.3e-34
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60
           MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI
Sbjct: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60

Query: 61  VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ 109
           VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ
Sbjct: 61  VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ 108

[Close]
BLAST of CsaV3_6G015390 vs. NCBI nr
Match: XP_008463248.1 (PREDICTED: uncharacterized protein LOC103501452 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 155 NDATVV-------SDQQTMIPCNPSVSQRSTRQHKPPSFLKNYHYHMLTHGSPPIDTILY 214
           NDAT V       + + T +PCN  + ++STRQHKPP+ LK+YH H+LTHGSPP DT  Y
Sbjct: 365 NDATNVDCIPNTTNTEHTTVPCNLLMPRKSTRQHKPPNLLKDYHCHLLTHGSPPKDTTSY 424

Query: 215 HRFNKSVVF 217
           H  NKS+ +
Sbjct: 425 HPLNKSLSY 433

[Close]
BLAST of CsaV3_6G015390 vs. TrEMBL
Match: tr|A0A0A0KBE6|A0A0A0KBE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G159180 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.8e-34
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60
           MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI
Sbjct: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60

Query: 61  VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ 109
           VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ
Sbjct: 61  VSNIFCRFXXXXXXXXXXXXXXXXXXXXXXXXSQTTLSLGFVPFTTLQ 108

[Close]
BLAST of CsaV3_6G015390 vs. TrEMBL
Match: tr|A0A1S3CJ63|A0A1S3CJ63_CUCME (uncharacterized protein LOC103501452 OS=Cucumis melo OX=3656 GN=LOC103501452 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 155 NDATVV-------SDQQTMIPCNPSVSQRSTRQHKPPSFLKNYHYHMLTHGSPPIDTILY 214
           NDAT V       + + T +PCN  + ++STRQHKPP+ LK+YH H+LTHGSPP DT  Y
Sbjct: 365 NDATNVDCIPNTTNTEHTTVPCNLLMPRKSTRQHKPPNLLKDYHCHLLTHGSPPKDTTSY 424

Query: 215 HRFNKSVVF 217
           H  NKS+ +
Sbjct: 425 HPLNKSLSY 433

The following BLAST results are available for this feature:
BLAST of CsaV3_6G015390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46995.17.3e-34100.00hypothetical protein Csa_6G159180 [Cucumis sativus][more]
XP_008463248.13.3e-1052.17PREDICTED: uncharacterized protein LOC103501452 [Cucumis melo][more]
BLAST of CsaV3_6G015390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G015390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G015390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBE6|A0A0A0KBE6_CUCSA4.8e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G159180 PE=4 SV=1[more]
tr|A0A1S3CJ63|A0A1S3CJ63_CUCME2.2e-1052.17uncharacterized protein LOC103501452 OS=Cucumis melo OX=3656 GN=LOC103501452 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G015390.1CsaV3_6G015390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G015390Cucumber (Chinese Long) v3cuccucB211
CsaV3_6G015390Silver-seed gourdcarcucB0027
CsaV3_6G015390Silver-seed gourdcarcucB0424
CsaV3_6G015390Silver-seed gourdcarcucB0570
CsaV3_6G015390Cucumber (Gy14) v2cgybcucB298
CsaV3_6G015390Cucumber (Gy14) v2cgybcucB303
CsaV3_6G015390Cucumber (Gy14) v1cgycucB586
CsaV3_6G015390Cucurbita maxima (Rimu)cmacucB0163
CsaV3_6G015390Cucurbita maxima (Rimu)cmacucB0630
CsaV3_6G015390Cucurbita maxima (Rimu)cmacucB0668
CsaV3_6G015390Cucurbita maxima (Rimu)cmacucB0754
CsaV3_6G015390Cucurbita moschata (Rifu)cmocucB0145
CsaV3_6G015390Cucurbita moschata (Rifu)cmocucB0616
CsaV3_6G015390Cucurbita moschata (Rifu)cmocucB0652
CsaV3_6G015390Cucurbita moschata (Rifu)cmocucB0743
CsaV3_6G015390Cucurbita pepo (Zucchini)cpecucB0314
CsaV3_6G015390Cucurbita pepo (Zucchini)cpecucB0362
CsaV3_6G015390Cucurbita pepo (Zucchini)cpecucB0923
CsaV3_6G015390Wild cucumber (PI 183967)cpicucB364
CsaV3_6G015390Wild cucumber (PI 183967)cpicucB368
CsaV3_6G015390Bottle gourd (USVL1VR-Ls)cuclsiB442
CsaV3_6G015390Bottle gourd (USVL1VR-Ls)cuclsiB456
CsaV3_6G015390Melon (DHL92) v3.5.1cucmeB448
CsaV3_6G015390Melon (DHL92) v3.5.1cucmeB505
CsaV3_6G015390Melon (DHL92) v3.6.1cucmedB422
CsaV3_6G015390Melon (DHL92) v3.6.1cucmedB492
CsaV3_6G015390Watermelon (Charleston Gray)cucwcgB460
CsaV3_6G015390Watermelon (97103) v1cucwmB538
CsaV3_6G015390Watermelon (97103) v2cucwmbB447
CsaV3_6G015390Wax gourdcucwgoB586
CsaV3_6G015390Wax gourdcucwgoB628