CsaV3_6G014690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G014690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	histone deacetylase HDT1-like
Location	chr6 : 10664496 .. 10665189 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTGGGGTAAGTTTCTGTTTACATATTCCATCCATGCTTTTGTTTGTGTCATCATCAGTTTTTGTTTTTGTTTATCGAAAGCTTTAGCACGTTCTTGAATAGATTTGCTTGCTTCTTTTGGGAGTACATATACTAGGCTAGCTCGGATGCAGATGCATAAACTTTGATGGTTTTTGAGCGATGTCTTAATATTTAGTGTATGATTAATACTTGAGTGTATGTGAAAGTTCATAATCGGTTTTGGGATTTTAGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGTACTTTAGTTGTCTATAGCCGTTTTCCCATTTCAACCACCGATTCTTATTGTTTGGAATGATTAATAGACGCCGAGATTGTTTTATGCAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

mRNA sequence

ATGGAGTTTTGGGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

Coding sequence (CDS)

ATGGAGTTTTGGGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

Protein sequence

MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLSADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLCFSCLVWF

Homology

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BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_004145781.1 (PREDICTED: histone deacetylase HDT1 [Cucumis sativus] >KGN46916.1 Histone deacetylase 2a [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  F   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEFSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_008458624.1 (PREDICTED: histone deacetylase HDT1-like [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 5.5e-52
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  +   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_022943360.1 (histone deacetylase HDT1-like [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 86/109 (78.90%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGD  Y+HLSQATLG+LKKDKANE VTIF+KI DQKLVLG+LS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           A+KFPQ+SFDLVFEKEFELSHNGK GSIYCLGY+A  EDQ    +   D
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEHEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_023513046.1 (histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 86/109 (78.90%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGD  Y+HLSQATLG+LKKDKANE VTIF+KI DQKLVLG+LS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           A+KFPQ+SFDLVFEKEFELSHNGK GSIYCLGY+A  EDQ    +   D
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEHEEYSDSD 109

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BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_022140604.1 (histone deacetylase HDT1-like [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ L+V+PGD  Y+HLSQATLG++KKDKANE VTIFLKI DQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQ 101
           A+KFPQ+SFDLVFEKEFELSHNGK GSIYCLGY+A  EDQ
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQ 100

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BLAST of CsaV3_6G014690 vs. TAIR10
Match: AT3G44750.1 (histone deacetylase 3)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-24
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVK G+P++V P +   +H+SQA+LG+  K+K  E V + +K+ +Q LVLG LS
Sbjct: 1   MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAP-MEDQG 102
            +  PQ+  DLVF+KEFELSH    GS+Y +GY+ P +E QG
Sbjct: 61  TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQG 101

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BLAST of CsaV3_6G014690 vs. TAIR10
Match: AT5G03740.1 (histone deacetylase 2C)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVK G+PL + PG    VH+SQ  LG+  K+   EP+ +++ +   KL++G LS
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMED 100
            +KFPQ+S ++V E+ F LSH  K GS++  GY+    D
Sbjct: 61  HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASD 98

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BLAST of CsaV3_6G014690 vs. TAIR10
Match: AT5G22650.1 (histone deacetylase 2B)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-22
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGV V P     V P + + VH+SQA+L      K+ E V + + +   KLV+G LS
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTV--KSGESVVLSVTVGGAKLVIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQY 104
            DKFPQISFDLVF+KEFELSH+G   +++ +GY++P  +Q  +
Sbjct: 61  QDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDF 101

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BLAST of CsaV3_6G014690 vs. TAIR10
Match: AT2G27840.1 (histone deacetylase-related / HD-related)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKI--DDQKLVLGV 60
          MEFWG+E+KPG+P  V   D   VH SQ TLGD++K K +E   +++KI  D+   ++G 
Sbjct: 1  MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60

Query: 61 LSADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYR 95
          LS  KFPQ S DL    EFE+SHN    S+Y +GYR
Sbjct: 61 LS-QKFPQFSIDLYLGHEFEISHNST-SSVYLIGYR 94

[Close]

BLAST of CsaV3_6G014690 vs. TAIR10
Match: AT3G12340.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 1  MEFWGVEVKPGQPLSVQPGD---MNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLG 60
          M FWGVEVKPG+  +++  +   +  +HLSQATLG       N  +      +   L+L 
Sbjct: 1  MAFWGVEVKPGKTFTLKNNEATGIRRLHLSQATLG--HGTATNRSILQCNVGNKSPLLLC 60

Query: 61 VLSADKFPQISFDLVFEKEFELSHNGKG-GSIYCLGY 94
          VL+ DK      +L FE+  E+  +  G  S++  GY
Sbjct: 61 VLTPDKVDSCQLNLEFEETDEVIFSVIGPRSVHLTGY 95

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BLAST of CsaV3_6G014690 vs. Swiss-Prot
Match: sp|Q6V9I6|HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG EVK G+PL+VQPGD   +HLSQA+LG+LKKDK +E V + + ID +KLVLG L+
Sbjct: 1   MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLN 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRA--PMED 100
           ++K PQ  FDLVF+++FELSHN K GS+Y  GY+A  P E+
Sbjct: 61  SEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEE 100

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BLAST of CsaV3_6G014690 vs. Swiss-Prot
Match: sp|Q8LJS2|HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MEFWGVEVKPGQPLSVQPGDM--NYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGV 60
          MEFWGVEVK GQ ++V P D   +Y+H+SQ  LG+ KKDK NEPV ++LK+ +QK+VLG 
Sbjct: 1  MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGT 60

Query: 61 LSADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYR 95
          LS D  P +S DLV + + ELSH  K  S++  GY+
Sbjct: 61 LSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYK 96

[Close]

BLAST of CsaV3_6G014690 vs. Swiss-Prot
Match: sp|Q9M4U5|HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +H+SQA LG+ KK   ++   +++K+DD+KL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQG 102
            DK+PQI FDLVF KEFELSH  K  S++  GY+     +G
Sbjct: 61  IDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIEG 98

[Close]

BLAST of CsaV3_6G014690 vs. Swiss-Prot
Match: sp|O24591|HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-23
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +HLSQA LG+ KK   ++   +++KIDDQKL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRA--PMED 100
            DK P I FDL+F+KEFELSH  K  S++  GY+   P E+
Sbjct: 61  VDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFEE 98

[Close]

BLAST of CsaV3_6G014690 vs. Swiss-Prot
Match: sp|Q9M4U4|HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-23
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +HLSQA LG+ KK   ++   +++KIDDQKL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRA--PMED 100
            DK P I FDL+F+KEFELSH  K  S++  GY+   P E+
Sbjct: 61  VDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFEE 98

[Close]

BLAST of CsaV3_6G014690 vs. TrEMBL
Match: tr|A0A0A0KGM8|A0A0A0KGM8_CUCSA (Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150550 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.7e-54
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  F   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEFSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. TrEMBL
Match: tr|A0A1S3C9I3|A0A1S3C9I3_CUCME (histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497974 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  +   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. TrEMBL
Match: tr|A0A1S3C9I8|A0A1S3C9I8_CUCME (histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497976 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVK GQ L V+PG+   +HLSQATLG++KKDKA+E VTIFLKI DQKLVLG+LS
Sbjct: 1   MEFWGVEVKAGQSLIVKPGNEKLIHLSQATLGEIKKDKASENVTIFLKIGDQKLVLGILS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMED 100
           A+KFPQ+SFDLVFEKEFELSHNGK GS+YC GY+A  +D
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSVYCAGYQAYGDD 99

[Close]

BLAST of CsaV3_6G014690 vs. TrEMBL
Match: tr|A0A2H5MZ79|A0A2H5MZ79_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_006500 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-32
Identity = 70/111 (63.06%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVK GQPL + PGD   VHLSQA+LG++KKDK +E V ++LK+DD+KLVLG LS
Sbjct: 5   MEFWGVEVKSGQPLKINPGDNKIVHLSQASLGEIKKDKGSESVYLYLKVDDKKLVLGTLS 64

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLC 112
           A KFPQ+SFDL  EK+FELSHN K GS+Y  GY+   E    YPF    LC
Sbjct: 65  AQKFPQLSFDLAIEKDFELSHNWKNGSVYFTGYKLRTEG---YPFH-SSLC 111

[Close]

BLAST of CsaV3_6G014690 vs. TrEMBL
Match: tr|A0A0A0KB05|A0A0A0KB05_CUCSA (Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150540 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.5e-32
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
          MEFWGVEVK GQ L V+PG+   +HLSQATLG++KK+KANE VTIFLKI DQKLVLG+LS
Sbjct: 1  MEFWGVEVKAGQSLIVKPGNEKLIHLSQATLGEIKKEKANENVTIFLKIGDQKLVLGILS 60

Query: 61 ADKFPQISFDLVFEKEFELSHNGKGGSI 89
           +KFPQ+SFDLVFEKEFELSHNGK GS+
Sbjct: 61 GEKFPQLSFDLVFEKEFELSHNGKSGSV 88

The following BLAST results are available for this feature:

BLAST of CsaV3_6G014690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145781.1	1.3e-53	95.41	PREDICTED: histone deacetylase HDT1 [Cucumis sativus] >KGN46916.1 Histone deacet...	[more]
XP_008458624.1	5.5e-52	92.66	PREDICTED: histone deacetylase HDT1-like [Cucumis melo]	[more]
XP_022943360.1	4.7e-43	78.90	histone deacetylase HDT1-like [Cucurbita moschata]	[more]
XP_023513046.1	4.7e-43	78.90	histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022140604.1	3.0e-42	84.00	histone deacetylase HDT1-like [Momordica charantia]	[more]

BLAST of CsaV3_6G014690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44750.1	4.5e-24	50.98	histone deacetylase 3	[more]
AT5G03740.1	1.5e-22	45.45	histone deacetylase 2C	[more]
AT5G22650.1	3.3e-22	47.57	histone deacetylase 2B	[more]
AT2G27840.1	2.6e-19	48.96	histone deacetylase-related / HD-related	[more]
AT3G12340.1	7.3e-06	34.02	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of CsaV3_6G014690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6V9I6\|HDT1_SOLCH	2.2e-28	60.40	Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1	[more]
sp\|Q8LJS2\|HDT1_SOYBN	2.0e-24	53.13	Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1	[more]
sp\|Q9M4U5\|HDT2_MAIZE	1.3e-23	49.50	Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1	[more]
sp\|O24591\|HDT1_MAIZE	6.3e-23	51.49	Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1	[more]
sp\|Q9M4U4\|HDT3_MAIZE	6.3e-23	51.49	Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1	[more]

BLAST of CsaV3_6G014690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGM8\|A0A0A0KGM8_CUCSA	8.7e-54	95.41	Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150550 PE=4 SV=1	[more]
tr\|A0A1S3C9I3\|A0A1S3C9I3_CUCME	3.7e-52	92.66	histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497974 PE=4 SV=1	[more]
tr\|A0A1S3C9I8\|A0A1S3C9I8_CUCME	9.7e-37	75.76	histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497976 PE=4 SV=1	[more]
tr\|A0A2H5MZ79\|A0A2H5MZ79_CITUN	1.9e-32	63.06	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_006500 PE=4 SV=1	[more]
tr\|A0A0A0KB05\|A0A0A0KB05_CUCSA	5.5e-32	77.27	Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150540 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G014690.1	CsaV3_6G014690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.60.120.340		coord: 1..101 e-value: 1.3E-7 score: 33.6
None	No IPR available	PANTHER	PTHR31802:SF8	HISTONE DEACETYLASE HDT1-RELATED	coord: 1..101
None	No IPR available	PANTHER	PTHR31802	FAMILY NOT NAMED	coord: 1..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G014690	Cla008675	Watermelon (97103) v1	cucwmB535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G014690	Silver-seed gourd	carcucB0281
CsaV3_6G014690	Silver-seed gourd	carcucB0375
CsaV3_6G014690	Silver-seed gourd	carcucB0966
CsaV3_6G014690	Cucumber (Gy14) v2	cgybcucB143
CsaV3_6G014690	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G014690	Cucumber (Gy14) v2	cgybcucB300
CsaV3_6G014690	Cucumber (Gy14) v1	cgycucB086
CsaV3_6G014690	Cucumber (Gy14) v1	cgycucB586
CsaV3_6G014690	Cucurbita maxima (Rimu)	cmacucB0310
CsaV3_6G014690	Cucurbita maxima (Rimu)	cmacucB0666
CsaV3_6G014690	Cucurbita maxima (Rimu)	cmacucB0753
CsaV3_6G014690	Cucurbita maxima (Rimu)	cmacucB0995
CsaV3_6G014690	Cucurbita maxima (Rimu)	cmacucB1037
CsaV3_6G014690	Cucurbita moschata (Rifu)	cmocucB0305
CsaV3_6G014690	Cucurbita moschata (Rifu)	cmocucB0741
CsaV3_6G014690	Cucurbita moschata (Rifu)	cmocucB0981
CsaV3_6G014690	Cucurbita moschata (Rifu)	cmocucB1021
CsaV3_6G014690	Cucurbita pepo (Zucchini)	cpecucB0360
CsaV3_6G014690	Cucurbita pepo (Zucchini)	cpecucB0619
CsaV3_6G014690	Cucurbita pepo (Zucchini)	cpecucB0782
CsaV3_6G014690	Cucurbita pepo (Zucchini)	cpecucB0934
CsaV3_6G014690	Cucurbita pepo (Zucchini)	cpecucB1078
CsaV3_6G014690	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G014690	Wild cucumber (PI 183967)	cpicucB367
CsaV3_6G014690	Bottle gourd (USVL1VR-Ls)	cuclsiB439
CsaV3_6G014690	Bottle gourd (USVL1VR-Ls)	cuclsiB463
CsaV3_6G014690	Bottle gourd (USVL1VR-Ls)	cuclsiB476
CsaV3_6G014690	Melon (DHL92) v3.5.1	cucmeB429
CsaV3_6G014690	Melon (DHL92) v3.5.1	cucmeB496
CsaV3_6G014690	Melon (DHL92) v3.5.1	cucmeB523
CsaV3_6G014690	Melon (DHL92) v3.6.1	cucmedB419
CsaV3_6G014690	Melon (DHL92) v3.6.1	cucmedB484
CsaV3_6G014690	Melon (DHL92) v3.6.1	cucmedB511
CsaV3_6G014690	Watermelon (Charleston Gray)	cucwcgB447
CsaV3_6G014690	Watermelon (Charleston Gray)	cucwcgB486
CsaV3_6G014690	Watermelon (Charleston Gray)	cucwcgB458
CsaV3_6G014690	Watermelon (97103) v1	cucwmB478
CsaV3_6G014690	Watermelon (97103) v1	cucwmB531
CsaV3_6G014690	Watermelon (97103) v2	cucwmbB437
CsaV3_6G014690	Watermelon (97103) v2	cucwmbB444
CsaV3_6G014690	Watermelon (97103) v2	cucwmbB473
CsaV3_6G014690	Wax gourd	cucwgoB627
CsaV3_6G014690	Wax gourd	cucwgoB653
CsaV3_6G014690	Cucumber (Chinese Long) v3	cuccucB143
CsaV3_6G014690	Cucumber (Chinese Long) v3	cuccucB210