CsaV3_6G014390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G014390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 10432952 .. 10433484 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATCAATACAAAATCCTCCCTGCAATTGAATCATGATTTATGATGATAATATAGAGTAGACCAGAGATATTAAACATGACTTTTGACCAACAAAAAATTACATTGCCCAAACGACAAGAAATGTATGGTTAAAGATAAAAACCCCAACACCCGATTGACCACTCCGGCTAATCATAGTTATGTATGATGTACATCACATTATATGAATATTATCAACCAATAAGAAGCCACTTTCTACCAGGCCAGGAAGGAACTATCAATTGGAATAACTTAACAATAACATTGACAGATAGTTTCAAATTTTCCAATAAAAGCAGGACCAATCACCATATACACAAAACCAGCAAAATGCAATACCTGGAGGCTGGAAACAGCTTAATAGGCTGGTCTCATCCAGTCTGGGAGAAGCAGCTCACAGTCACTGGGTATTTATTGCATGCGTATCATTGTGATAACCACCAAAGAGGAAGTATCCAGGTAGACACTTCACATTTTACATCCGCCGTCATTGCTTGGGATATCTGTTGGTGA

mRNA sequence

ATGATGTACATCACATTATATGAATATTATCAACCAATAAGAAGCCACTTTCTACCAGGCCAGGAAGGAACTATCAATTGGAATAACTTAACAATAACATTGACAGATAGTTTCAAATTTTCCAATAAAAGCAGGACCAATCACCATATACACAAAACCAGCAAAATGCAATACCTGGAGGCTGGAAACAGCTTAATAGGCTGGTCTCATCCAGTCTGGGAGAAGCAGCTCACAGTCACTGGGTATTTATTGCATGCGTATCATTGTGATAACCACCAAAGAGGAAGTATCCAGGTAGACACTTCACATTTTACATCCGCCGTCATTGCTTGGGATATCTGTTGGTGA

Coding sequence (CDS)

ATGATGTACATCACATTATATGAATATTATCAACCAATAAGAAGCCACTTTCTACCAGGCCAGGAAGGAACTATCAATTGGAATAACTTAACAATAACATTGACAGATAGTTTCAAATTTTCCAATAAAAGCAGGACCAATCACCATATACACAAAACCAGCAAAATGCAATACCTGGAGGCTGGAAACAGCTTAATAGGCTGGTCTCATCCAGTCTGGGAGAAGCAGCTCACAGTCACTGGGTATTTATTGCATGCGTATCATTGTGATAACCACCAAAGAGGAAGTATCCAGGTAGACACTTCACATTTTACATCCGCCGTCATTGCTTGGGATATCTGTTGGTGA

Protein sequence

MMYITLYEYYQPIRSHFLPGQEGTINWNNLTITLTDSFKFSNKSRTNHHIHKTSKMQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW
Homology
[Close]
BLAST of CsaV3_6G014390 vs. NCBI nr
Match: KGN46885.1 (hypothetical protein Csa_6G148280 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 7.6e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 56  MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW 115
           MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW
Sbjct: 1   MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW 60

[Close]
BLAST of CsaV3_6G014390 vs. TrEMBL
Match: tr|A0A0A0KAX2|A0A0A0KAX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148280 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.0e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 56  MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW 115
           MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW
Sbjct: 1   MQYLEAGNSLIGWSHPVWEKQLTVTGYLLHAYHCDNHQRGSIQVDTSHFTSAVIAWDICW 60

The following BLAST results are available for this feature:
BLAST of CsaV3_6G014390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46885.17.6e-30100.00hypothetical protein Csa_6G148280 [Cucumis sativus][more]
BLAST of CsaV3_6G014390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G014390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G014390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAX2|A0A0A0KAX2_CUCSA5.0e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G014390.1CsaV3_6G014390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G014390Cucumber (Gy14) v2cgybcucB143
CsaV3_6G014390Cucumber (Gy14) v2cgybcucB298
CsaV3_6G014390Cucumber (Gy14) v2cgybcucB300
CsaV3_6G014390Cucumber (Gy14) v1cgycucB172
CsaV3_6G014390Cucumber (Gy14) v1cgycucB477
CsaV3_6G014390Cucumber (Gy14) v1cgycucB586
CsaV3_6G014390Cucurbita maxima (Rimu)cmacucB0310
CsaV3_6G014390Cucurbita maxima (Rimu)cmacucB0666
CsaV3_6G014390Cucurbita maxima (Rimu)cmacucB0753
CsaV3_6G014390Cucurbita maxima (Rimu)cmacucB0995
CsaV3_6G014390Cucurbita maxima (Rimu)cmacucB1037
CsaV3_6G014390Cucurbita moschata (Rifu)cmocucB0305
CsaV3_6G014390Cucurbita moschata (Rifu)cmocucB0651
CsaV3_6G014390Cucurbita moschata (Rifu)cmocucB0741
CsaV3_6G014390Cucurbita moschata (Rifu)cmocucB0981
CsaV3_6G014390Cucurbita moschata (Rifu)cmocucB1021
CsaV3_6G014390Cucurbita pepo (Zucchini)cpecucB0360
CsaV3_6G014390Cucurbita pepo (Zucchini)cpecucB0619
CsaV3_6G014390Cucurbita pepo (Zucchini)cpecucB0782
CsaV3_6G014390Cucurbita pepo (Zucchini)cpecucB0926
CsaV3_6G014390Cucurbita pepo (Zucchini)cpecucB1078
CsaV3_6G014390Wild cucumber (PI 183967)cpicucB181
CsaV3_6G014390Wild cucumber (PI 183967)cpicucB364
CsaV3_6G014390Wild cucumber (PI 183967)cpicucB367
CsaV3_6G014390Bottle gourd (USVL1VR-Ls)cuclsiB439
CsaV3_6G014390Bottle gourd (USVL1VR-Ls)cuclsiB463
CsaV3_6G014390Bottle gourd (USVL1VR-Ls)cuclsiB476
CsaV3_6G014390Melon (DHL92) v3.5.1cucmeB429
CsaV3_6G014390Melon (DHL92) v3.5.1cucmeB496
CsaV3_6G014390Melon (DHL92) v3.5.1cucmeB523
CsaV3_6G014390Melon (DHL92) v3.6.1cucmedB419
CsaV3_6G014390Melon (DHL92) v3.6.1cucmedB484
CsaV3_6G014390Melon (DHL92) v3.6.1cucmedB511
CsaV3_6G014390Watermelon (Charleston Gray)cucwcgB447
CsaV3_6G014390Watermelon (Charleston Gray)cucwcgB486
CsaV3_6G014390Watermelon (Charleston Gray)cucwcgB458
CsaV3_6G014390Watermelon (97103) v1cucwmB478
CsaV3_6G014390Watermelon (97103) v1cucwmB531
CsaV3_6G014390Watermelon (97103) v1cucwmB535
CsaV3_6G014390Watermelon (97103) v2cucwmbB437
CsaV3_6G014390Watermelon (97103) v2cucwmbB444
CsaV3_6G014390Watermelon (97103) v2cucwmbB473
CsaV3_6G014390Wax gourdcucwgoB546
CsaV3_6G014390Wax gourdcucwgoB627
CsaV3_6G014390Wax gourdcucwgoB653
CsaV3_6G014390Cucumber (Chinese Long) v3cuccucB140
CsaV3_6G014390Cucumber (Chinese Long) v3cuccucB210
CsaV3_6G014390Silver-seed gourdcarcucB0189
CsaV3_6G014390Silver-seed gourdcarcucB0281
CsaV3_6G014390Silver-seed gourdcarcucB0375
CsaV3_6G014390Silver-seed gourdcarcucB0966