CsaV3_6G014160 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G014160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 10298418 .. 10298851 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAAGCAATAACAGCAAATGGGTAGTGGTGATTTTCCTCGATGGCCACAGTTTTGAGAAGGTTCTCTGCGTTGGAAAACATTCTTGTCTTGAGGAGTCTATAGATGACGATCAAATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGAATTGACATTAATGAAAGTTTAGGTTCTTCGTTCAACTATCAATGGAGAAGAAACTCAACTTAAATTCTTTCTGATCAGAATT

mRNA sequence

GGAAGCAATAACAGCAAATGGGTAGTGGTGATTTTCCTCGATGGCCACAGTTTTGAGAAGGTTCTCTGCGTTGGAAAACATTCTTGTCTTGAGGAGTCTATAGATGACGATCAAATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGA

Coding sequence (CDS)

GGAAGCAATAACAGCAAATGGGTAGTGGTGATTTTCCTCGATGGCCACAGTTTTGAGAAGGTTCTCTGCGTTGGAAAACATTCTTGTCTTGAGGAGTCTATAGATGACGATCAAATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGA

Protein sequence

GSNNSKWVVVIFLDGHSFEKVLCVGKHSCLEESIDDDQMGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIYVSGLGKELDRRLGVLRRF
BLAST of CsaV3_6G014160 vs. NCBI nr
Match: KGN46862.1 (hypothetical protein Csa_6G147550 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 39  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 98
           MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY
Sbjct: 1   MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60

Query: 99  VSGLGKELDRRLGVLRRF 117
           VSGLGKELDRRLGVLRRF
Sbjct: 61  VSGLGKELDRRLGVLRRF 78

BLAST of CsaV3_6G014160 vs. TrEMBL
Match: tr|A0A0A0KEM4|A0A0A0KEM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147550 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.4e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 39  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 98
           MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY
Sbjct: 1   MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60

Query: 99  VSGLGKELDRRLGVLRRF 117
           VSGLGKELDRRLGVLRRF
Sbjct: 61  VSGLGKELDRRLGVLRRF 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN46862.16.7e-34100.00hypothetical protein Csa_6G147550 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KEM4|A0A0A0KEM4_CUCSA4.4e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147550 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G014160.1CsaV3_6G014160.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..86

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G014160CSPI06G11730Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G014160Cucumber (Chinese Long) v3cuccucB140
CsaV3_6G014160Cucumber (Chinese Long) v3cuccucB210
CsaV3_6G014160Silver-seed gourdcarcucB0189
CsaV3_6G014160Silver-seed gourdcarcucB0375
CsaV3_6G014160Silver-seed gourdcarcucB0966
CsaV3_6G014160Cucumber (Gy14) v2cgybcucB143
CsaV3_6G014160Cucumber (Gy14) v2cgybcucB298
CsaV3_6G014160Cucumber (Gy14) v2cgybcucB300
CsaV3_6G014160Cucumber (Gy14) v1cgycucB172
CsaV3_6G014160Cucumber (Gy14) v1cgycucB477
CsaV3_6G014160Cucumber (Gy14) v1cgycucB586
CsaV3_6G014160Cucurbita maxima (Rimu)cmacucB0666
CsaV3_6G014160Cucurbita maxima (Rimu)cmacucB0753
CsaV3_6G014160Cucurbita maxima (Rimu)cmacucB0812
CsaV3_6G014160Cucurbita maxima (Rimu)cmacucB0995
CsaV3_6G014160Cucurbita maxima (Rimu)cmacucB1037
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB0257
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB0651
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB0741
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB0796
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB0981
CsaV3_6G014160Cucurbita moschata (Rifu)cmocucB1021
CsaV3_6G014160Cucurbita pepo (Zucchini)cpecucB0095
CsaV3_6G014160Cucurbita pepo (Zucchini)cpecucB0360
CsaV3_6G014160Cucurbita pepo (Zucchini)cpecucB0619
CsaV3_6G014160Cucurbita pepo (Zucchini)cpecucB0926
CsaV3_6G014160Cucurbita pepo (Zucchini)cpecucB1078
CsaV3_6G014160Wild cucumber (PI 183967)cpicucB181
CsaV3_6G014160Wild cucumber (PI 183967)cpicucB367
CsaV3_6G014160Bottle gourd (USVL1VR-Ls)cuclsiB439
CsaV3_6G014160Bottle gourd (USVL1VR-Ls)cuclsiB463
CsaV3_6G014160Bottle gourd (USVL1VR-Ls)cuclsiB476
CsaV3_6G014160Bottle gourd (USVL1VR-Ls)cuclsiB478
CsaV3_6G014160Melon (DHL92) v3.5.1cucmeB424
CsaV3_6G014160Melon (DHL92) v3.5.1cucmeB429
CsaV3_6G014160Melon (DHL92) v3.5.1cucmeB496
CsaV3_6G014160Melon (DHL92) v3.5.1cucmeB523
CsaV3_6G014160Melon (DHL92) v3.6.1cucmedB419
CsaV3_6G014160Melon (DHL92) v3.6.1cucmedB484
CsaV3_6G014160Melon (DHL92) v3.6.1cucmedB511
CsaV3_6G014160Watermelon (Charleston Gray)cucwcgB447
CsaV3_6G014160Watermelon (Charleston Gray)cucwcgB486
CsaV3_6G014160Watermelon (Charleston Gray)cucwcgB458
CsaV3_6G014160Watermelon (97103) v1cucwmB478
CsaV3_6G014160Watermelon (97103) v1cucwmB531
CsaV3_6G014160Watermelon (97103) v1cucwmB535
CsaV3_6G014160Watermelon (97103) v2cucwmbB437
CsaV3_6G014160Watermelon (97103) v2cucwmbB444
CsaV3_6G014160Watermelon (97103) v2cucwmbB473
CsaV3_6G014160Wax gourdcucwgoB546
CsaV3_6G014160Wax gourdcucwgoB653
CsaV3_6G014160Wax gourdcucwgoB657