CsaV3_6G013620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G013620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 9769600 .. 9769803 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCATAGGAATAAGAAAGAGTCTTTAAACAAACAGGAACTTGCTCTTCAACCTATTGAAATCTTCTTCAACCGTTCGCCAAATGCTTTCTTCAACCAATTGGAGATTTTGGAGCAGACGAATGGAATAAATGTGGAGCGAAAGAATGTTTTTCAATGGAGGGATGGCAGGAATGCTTTTTGGTGGAAAGATGATTTTTGA

mRNA sequence

ATGAGTCATAGGAATAAGAAAGAGTCTTTAAACAAACAGGAACTTGCTCTTCAACCTATTGAAATCTTCTTCAACCGTTCGCCAAATGCTTTCTTCAACCAATTGGAGATTTTGGAGCAGACGAATGGAATAAATGTGGAGCGAAAGAATGTTTTTCAATGGAGGGATGGCAGGAATGCTTTTTGGTGGAAAGATGATTTTTGA

Coding sequence (CDS)

ATGAGTCATAGGAATAAGAAAGAGTCTTTAAACAAACAGGAACTTGCTCTTCAACCTATTGAAATCTTCTTCAACCGTTCGCCAAATGCTTTCTTCAACCAATTGGAGATTTTGGAGCAGACGAATGGAATAAATGTGGAGCGAAAGAATGTTTTTCAATGGAGGGATGGCAGGAATGCTTTTTGGTGGAAAGATGATTTTTGA

Protein sequence

MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNAFWWKDDF
Homology
[Close]
BLAST of CsaV3_6G013620 vs. NCBI nr
Match: KGN46808.1 (hypothetical protein Csa_6G138100 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA 60
          MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA
Sbjct: 1  MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA 60

Query: 61 FWWKDDF 68
          FWWKDDF
Sbjct: 61 FWWKDDF 67

[Close]
BLAST of CsaV3_6G013620 vs. TrEMBL
Match: tr|A0A0A0KBA3|A0A0A0KBA3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138100 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.1e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA 60
          MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA
Sbjct: 1  MSHRNKKESLNKQELALQPIEIFFNRSPNAFFNQLEILEQTNGINVERKNVFQWRDGRNA 60

Query: 61 FWWKDDF 68
          FWWKDDF
Sbjct: 61 FWWKDDF 67

The following BLAST results are available for this feature:
BLAST of CsaV3_6G013620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46808.11.4e-31100.00hypothetical protein Csa_6G138100 [Cucumis sativus][more]
BLAST of CsaV3_6G013620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G013620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G013620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBA3|A0A0A0KBA3_CUCSA9.1e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G013620.1CsaV3_6G013620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G013620Watermelon (97103) v2cucwmbB459
CsaV3_6G013620Watermelon (97103) v2cucwmbB528
CsaV3_6G013620Wax gourdcucwgoB580
CsaV3_6G013620Wax gourdcucwgoB618
CsaV3_6G013620Cucumber (Chinese Long) v3cuccucB215
CsaV3_6G013620Silver-seed gourdcarcucB0029
CsaV3_6G013620Silver-seed gourdcarcucB0033
CsaV3_6G013620Silver-seed gourdcarcucB0370
CsaV3_6G013620Silver-seed gourdcarcucB0425
CsaV3_6G013620Silver-seed gourdcarcucB0568
CsaV3_6G013620Cucumber (Gy14) v2cgybcucB298
CsaV3_6G013620Cucumber (Gy14) v2cgybcucB345
CsaV3_6G013620Cucumber (Gy14) v1cgycucB159
CsaV3_6G013620Cucumber (Gy14) v1cgycucB360
CsaV3_6G013620Cucurbita maxima (Rimu)cmacucB0167
CsaV3_6G013620Cucurbita maxima (Rimu)cmacucB0633
CsaV3_6G013620Cucurbita maxima (Rimu)cmacucB0677
CsaV3_6G013620Cucurbita maxima (Rimu)cmacucB0746
CsaV3_6G013620Cucurbita maxima (Rimu)cmacucB0762
CsaV3_6G013620Cucurbita moschata (Rifu)cmocucB0151
CsaV3_6G013620Cucurbita moschata (Rifu)cmocucB0618
CsaV3_6G013620Cucurbita moschata (Rifu)cmocucB0660
CsaV3_6G013620Cucurbita moschata (Rifu)cmocucB0734
CsaV3_6G013620Cucurbita moschata (Rifu)cmocucB0749
CsaV3_6G013620Cucurbita pepo (Zucchini)cpecucB0317
CsaV3_6G013620Cucurbita pepo (Zucchini)cpecucB0349
CsaV3_6G013620Cucurbita pepo (Zucchini)cpecucB0862
CsaV3_6G013620Cucurbita pepo (Zucchini)cpecucB0931
CsaV3_6G013620Cucurbita pepo (Zucchini)cpecucB0941
CsaV3_6G013620Wild cucumber (PI 183967)cpicucB364
CsaV3_6G013620Wild cucumber (PI 183967)cpicucB410
CsaV3_6G013620Bottle gourd (USVL1VR-Ls)cuclsiB430
CsaV3_6G013620Bottle gourd (USVL1VR-Ls)cuclsiB452
CsaV3_6G013620Melon (DHL92) v3.5.1cucmeB432
CsaV3_6G013620Melon (DHL92) v3.5.1cucmeB467
CsaV3_6G013620Melon (DHL92) v3.6.1cucmedB437
CsaV3_6G013620Melon (DHL92) v3.6.1cucmedB457
CsaV3_6G013620Watermelon (Charleston Gray)cucwcgB441
CsaV3_6G013620Watermelon (Charleston Gray)cucwcgB470
CsaV3_6G013620Watermelon (97103) v1cucwmB472
CsaV3_6G013620Watermelon (97103) v1cucwmB549