CsaV3_6G012340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G012340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	transcription repressor MYB6-like
Location	chr6 : 8510860 .. 8512383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATCCCTCTGTGGAGTATAGGCCCCCACTCCACGCGTAAGATGTCTCATACTCTAAAATCCTTAAATTATTTATATTCCATTCCCTATAGTTTCTGCGGATTCTATTGCAACTCTTTTAAATATATTCACTTGGATACTATACAATTCTTAATTAGAGATTGATATATGAGTTTATGTCATACTTTCACTCACTACTCTCTCTCTCCCTCTCTCTTTGTATGTGTGTCTCACAAACAAACAACAACAACATAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTCAAGAGAGGTGCTTGGAGTTTGGAAGAAGATCAAAAGCTTAGAGCTTACATCGAGAAATACGGCCCTTGGAAATGGCGGGAGGTTCCAAGGCTTGCAGGTACTTAAACCTACTTTGCAATCCGCATTTGTTTAAATTGACTTTTAAATATTCAAAAAGTGATCATATCTAACCCTTAGTTAATTTAATTTTGATGCGGAATTTTCTGCAGGATTGATGAGATGTGGGAAGAGTTGTAGACTGAGATGGTTGAATTATCTTCGTCCGGGTCTTAAGCGAGGAAACTACACAAATGAAGAAAATGAATTAATCTGCAAATTGCATCAAACGCATGGAAATAGGTACGTATCAAAATGAAGTAAAAAATCGGAGATAGTTTGAATGAATTATATTGTATTGTATAATTATGAACAAATAATATAATATAACTAATGAAATCATGTATTTATTTAATGTTTGAAGATGGTCAACTATCGCCGCAAAGTTACCCGGAAGAACAGACAACGAAGTAAAGAATTATTGGAATGCTCACTTAAAGAAACAAGTGAAGCCGAAAACAGAATCATCAACAAAACATGAGGGAAAACCAAAGGATCTAAGTTTGTCTCATGTTTATGAAGCAAAAACATCAAAGGACTTCGCGGAGTACTGTTCAAGCACATTTGGGATCCTAGAAAGCAGCTCATGTTTGTCCCAACAAACATCTTCAAGTGATGATAATTTTGGGACTGTAATAAATTGGAGAATGGAAGACTATAATATTGATCAGCTGCAGATCAGTGGGTACTATGATGATTTCTGGACAGAACCATATGTTTGGGATCACAATGAAACAAATGCATTCTCAGTAGACTATGGAATTGAAATGTTTTCTCCTCAACAACAATATGAAACAGCCTACGACCATAATTACTGTGATTTGTTCTGCTAGCTACTTTTCTTGGTGTTCATATTAGAAACATCCAACCATATTGTTTCTAATTTCCTACTTTATACAGATGTTATGTATGATCATCATGCATTTGGAAGATTGTACATTAGTTGTTGTCCATATTTTTCCAAAACTCTTGGAATATGCCACTTTAAGGAAAACTGAGATTTTGAAGGGCGGAGCAGGTGCATTCAAATTTGTAAATCAGCCACATACTCTTAAATTATTTTCGATTTGGAAAAAGTTCAATGTTGTATATATTGAAGAAAGGTAATAAATTGTGGTAATATTTACGCAAACATTGG

mRNA sequence

ATGTCATACTTTCACTCACTACTCTCTCTCTCCCTCTCTCTTTGTATGTGTGTCTCACAAACAAACAACAACAACATAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTCAAGAGAGGTGCTTGGAGTTTGGAAGAAGATCAAAAGCTTAGAGCTTACATCGAGAAATACGGCCCTTGGAAATGGCGGGAGGTTCCAAGGCTTGCAGGATTGATGAGATGTGGGAAGAGTTGTAGACTGAGATGGTTGAATTATCTTCGTCCGGGTCTTAAGCGAGGAAACTACACAAATGAAGAAAATGAATTAATCTGCAAATTGCATCAAACGCATGGAAATAGATGGTCAACTATCGCCGCAAAGTTACCCGGAAGAACAGACAACGAAGTAAAGAATTATTGGAATGCTCACTTAAAGAAACAAGTGAAGCCGAAAACAGAATCATCAACAAAACATGAGGGAAAACCAAAGGATCTAAGTTTGTCTCATGTTTATGAAGCAAAAACATCAAAGGACTTCGCGGAGTACTGTTCAAGCACATTTGGGATCCTAGAAAGCAGCTCATGTTTGTCCCAACAAACATCTTCAAGTGATGATAATTTTGGGACTGTAATAAATTGGAGAATGGAAGACTATAATATTGATCAGCTGCAGATCAGTGGGTACTATGATGATTTCTGGACAGAACCATATGTTTGGGATCACAATGAAACAAATGCATTCTCAGTAGACTATGGAATTGAAATGTTTTCTCCTCAACAACAATATGAAACAGCCTACGACCATAATTACTGTGATTTGTTCTGCTAG

Coding sequence (CDS)

ATGTCATACTTTCACTCACTACTCTCTCTCTCCCTCTCTCTTTGTATGTGTGTCTCACAAACAAACAACAACAACATAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTCAAGAGAGGTGCTTGGAGTTTGGAAGAAGATCAAAAGCTTAGAGCTTACATCGAGAAATACGGCCCTTGGAAATGGCGGGAGGTTCCAAGGCTTGCAGGATTGATGAGATGTGGGAAGAGTTGTAGACTGAGATGGTTGAATTATCTTCGTCCGGGTCTTAAGCGAGGAAACTACACAAATGAAGAAAATGAATTAATCTGCAAATTGCATCAAACGCATGGAAATAGATGGTCAACTATCGCCGCAAAGTTACCCGGAAGAACAGACAACGAAGTAAAGAATTATTGGAATGCTCACTTAAAGAAACAAGTGAAGCCGAAAACAGAATCATCAACAAAACATGAGGGAAAACCAAAGGATCTAAGTTTGTCTCATGTTTATGAAGCAAAAACATCAAAGGACTTCGCGGAGTACTGTTCAAGCACATTTGGGATCCTAGAAAGCAGCTCATGTTTGTCCCAACAAACATCTTCAAGTGATGATAATTTTGGGACTGTAATAAATTGGAGAATGGAAGACTATAATATTGATCAGCTGCAGATCAGTGGGTACTATGATGATTTCTGGACAGAACCATATGTTTGGGATCACAATGAAACAAATGCATTCTCAGTAGACTATGGAATTGAAATGTTTTCTCCTCAACAACAATATGAAACAGCCTACGACCATAATTACTGTGATTTGTTCTGCTAG

Protein sequence

MSYFHSLLSLSLSLCMCVSQTNNNNIMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNAFSVDYGIEMFSPQQQYETAYDHNYCDLFC

Homology

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BLAST of CsaV3_6G012340 vs. NCBI nr
Match: XP_004140052.2 (PREDICTED: transcription repressor MYB6-like [Cucumis sativus] >KGN46680.1 hypothetical protein Csa_6G121970 [Cucumis sativus])

HSP 1 Score: 528.9 bits (1361), Expect = 1.0e-146
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP 60
           MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP
Sbjct: 1   MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP 60

Query: 61  WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA 120
           WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA
Sbjct: 61  WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA 120

Query: 121 KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST 180
           KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST
Sbjct: 121 KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST 180

Query: 181 FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA 240
           FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA
Sbjct: 181 FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA 240

Query: 241 FSVDYGIEMFSPQQQYETAYDHNYCDLFC 270
           FSVDYGIEMFSPQQQYETAYDHNYCDLFC
Sbjct: 241 FSVDYGIEMFSPQQQYETAYDHNYCDLFC 269

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BLAST of CsaV3_6G012340 vs. NCBI nr
Match: XP_008448223.1 (PREDICTED: transcription repressor MYB6-like [Cucumis melo])

HSP 1 Score: 486.1 bits (1250), Expect = 7.7e-134
Identity = 250/272 (91.91%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MSYFHSLLS--XXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY 60
           MSYFHS+LS  XXXXXXXXXXXXXXXX MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY
Sbjct: 1   MSYFHSVLSXXXXXXXXXXXXXXXXXXIMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY 60

Query: 61  GPWKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTI 120
           GPWKWREVP LAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQ +GNRWSTI
Sbjct: 61  GPWKWREVPTLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQKYGNRWSTI 120

Query: 121 AAKLPGRTDNEVKNYWNAHLKKQVKPKTESST-KHEGKPKDLSLSHVYEAKTSKDFAEYC 180
           AAKLPGRTDNEVKN+WNAHLKKQVKPKTESST KHEGKPK+L LSHVYEAKTSKDFAEYC
Sbjct: 121 AAKLPGRTDNEVKNHWNAHLKKQVKPKTESSTIKHEGKPKELRLSHVYEAKTSKDFAEYC 180

Query: 181 SSTFGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNE 240
           SSTFGI+ESSSC SQ+TSSSDDNFGT INW MEDYNIDQLQI GYYD+FWTEPYVWDHN+
Sbjct: 181 SSTFGIVESSSCFSQETSSSDDNFGTEINWGMEDYNIDQLQICGYYDNFWTEPYVWDHNQ 240

Query: 241 TNAFSVDYGIEMFSPQQQYETAYDHNYCDLFC 270
           TNAFS DYGI MFSPQQQYET YDHNYCDLFC
Sbjct: 241 TNAFSEDYGIRMFSPQQQYETTYDHNYCDLFC 272

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BLAST of CsaV3_6G012340 vs. NCBI nr
Match: XP_023512861.1 (transcription factor MYB30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.6 bits (828), Expect = 6.6e-85
Identity = 171/244 (70.08%), Postives = 194/244 (79.51%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAPVVDKDGV+RGAWS EED+KLRAY+++YGP KWRE+P LAGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRPG+KRGNYT+EEN+LIC LH+ HGNRW+TIAAKLPGRTDNE+KN+WNAHLKKQVKPK 
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWATIAAKLPGRTDNEIKNHWNAHLKKQVKPKP 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206
           +SST  + KPK L+ S V EAK  +DF  Y S+TFGILESSS LSQQTSS DDNF T  N
Sbjct: 121 QSST--QPKPKQLT-SQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ-N 180

Query: 207 WRMEDYNIDQLQISGYYDDFWTEPYVWD-HNETNAFSVDYGIEMFSPQQQYETAYDHNYC 266
           W +EDY+      SGYY DFWTE  V D  +    FS DY I +FSP Q +E  YD NY 
Sbjct: 181 WGVEDYD-----RSGYYQDFWTEQCVSDVLDGCLEFSADYEIGIFSP-QHHEPTYDDNYI 232

Query: 267 DLFC 270
           DLFC
Sbjct: 241 DLFC 232

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BLAST of CsaV3_6G012340 vs. NCBI nr
Match: XP_022944612.1 (transcription factor MYB30-like [Cucurbita moschata])

HSP 1 Score: 320.1 bits (819), Expect = 7.3e-84
Identity = 172/245 (70.20%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAPVVDKDGV+RGAWS EED+KLRAY+ +YGP KWRE+P LAGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVHRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRPG+KRGNYT+EEN+LIC LH+ HGNRWSTIAAKLPGRTDNE+KN+WNAHLKKQVKPK 
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWSTIAAKLPGRTDNEIKNHWNAHLKKQVKPKP 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206
           +SST  + KPK L+ S V EAK  +DF  Y S+TFGILESSS LSQQTSS DDNF T  N
Sbjct: 121 QSST--QPKPKQLT-SQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ-N 180

Query: 207 WRMEDYNIDQLQISGYYDDFW-TEPYVWD-HNETNAFSVDYGIEMFSPQQQYETAYDHNY 266
           W +EDY+      SGYY+DFW TE  V D  +    FS DY I +FSP Q +E  YD NY
Sbjct: 181 WGVEDYD-----RSGYYEDFWTTEQCVSDVLDGCLEFSADYEIGIFSP-QHHEPTYDDNY 233

Query: 267 CDLFC 270
            DLFC
Sbjct: 241 IDLFC 233

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BLAST of CsaV3_6G012340 vs. NCBI nr
Match: XP_022140615.1 (transcription factor MYB30-like [Momordica charantia])

HSP 1 Score: 318.5 bits (815), Expect = 2.1e-83
Identity = 166/253 (65.61%), Postives = 193/253 (76.28%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAPVVD++G+KRGAWSLEED KL AY+EKYGPWKWR+VPRLAGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDENGLKRGAWSLEEDHKLTAYVEKYGPWKWRQVPRLAGLTRCGKSCRLRWLNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRPG+KRGNYTNEEN+LICKLH+ +GNRWSTIAAKLPGRTDNEVKN+WNAHLKKQV PK 
Sbjct: 61  LRPGIKRGNYTNEENDLICKLHEKYGNRWSTIAAKLPGRTDNEVKNHWNAHLKKQVNPKG 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206
            +++  + KPK L+ S +  AKT   F +Y S  FGILESSS LS+QT SSDDNFG ++N
Sbjct: 121 AAASS-QPKPKQLTSSQIKLAKTEPSFFDYSSLEFGILESSS-LSRQTFSSDDNFG-IMN 180

Query: 207 WRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA----------FSVDYGIEMFSPQQQY 266
           W +EDY+      S  Y DFW+EP++WD                FS DYGI  FSP   +
Sbjct: 181 WAVEDYD-----HSTGYGDFWSEPFIWDDRNNVGHVPDPDASWEFSSDYGI--FSP--HH 240

Query: 267 ETAYDHNYCDLFC 270
           ET YD +Y DLFC
Sbjct: 241 ETTYD-DYVDLFC 240

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BLAST of CsaV3_6G012340 vs. TAIR10
Match: AT1G56160.1 (myb domain protein 72)

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-43
Identity = 89/201 (44.28%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK+ VKRG WS +ED  L  +I+K+G   WR +P+LAGL+RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKTES 148
           P +KRGN++ +E + I   HQT GN+WS IA+ LPGRTDNE+KN WN HLKK++ P + S
Sbjct: 65  PDVKRGNFSKKEEDAIIHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRLTPSSSS 124

Query: 149 STKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVINWR 208
           S          SLS  ++  T  D  + C      + S    SQ +++S  + G  ++ +
Sbjct: 125 S----------SLSSTHDQSTKADHDKNCDGAQEEIHSGLNESQNSATSSHHQGECMHTK 184

Query: 209 MEDYNI---DQLQISGYYDDF 227
            E + +   +++Q    +DDF
Sbjct: 185 PELHEVNGLNEIQFLLDHDDF 195

[Close]

BLAST of CsaV3_6G012340 vs. TAIR10
Match: AT2G16720.1 (myb domain protein 7)

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-43
Identity = 77/146 (52.74%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           M R+P  +K+ + +GAW+ EED++L +YI+ +G   WR +PR AGL+RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRP LKRGN+T++E+ELI KLH   GN+WS IAA+LPGRTDNE+KNYWN H+K+++  K 
Sbjct: 61  LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKG 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKD 173
                H G    ++ + + + K +KD
Sbjct: 121 IDPATHRG----INEAKISDLKKTKD 142

[Close]

BLAST of CsaV3_6G012340 vs. TAIR10
Match: AT3G12820.1 (myb domain protein 10)

HSP 1 Score: 171.4 bits (433), Expect = 7.6e-43
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK  VKRG WS EE ++LR++I K G   WR +P+LAGLMRCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQV 143
           PGLKRGN+T EE + I  LHQ +GN+WS IA+  PGRTDNE+KN WN HLKK++
Sbjct: 65  PGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRL 118

[Close]

BLAST of CsaV3_6G012340 vs. TAIR10
Match: AT1G79180.1 (myb domain protein 63)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-42
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK  VKRG WS EED KL ++I+K+G   WR +P+ +GL+RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQV------ 148
           P LKRGN+T+EE E I KLH  +GN+WS IA++LPGRTDNE+KN W+ HLKK++      
Sbjct: 65  PDLKRGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSSGT 124

Query: 149 --KPKTESSTKHEGKPKDLSLSHVYEA 168
             +P +  S+    + KD   SHV ++
Sbjct: 125 ADEPASPCSSDSVSRGKDDKSSHVEDS 151

[Close]

BLAST of CsaV3_6G012340 vs. TAIR10
Match: AT4G38620.1 (myb domain protein 4)

HSP 1 Score: 168.3 bits (425), Expect = 6.4e-42
Identity = 77/143 (53.85%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           M R+P  +K    +GAW+ EED++L AYI+ +G   WR +P+ AGL+RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQV---- 146
           LRP LKRGN+T EE+ELI KLH   GN+WS IA +LPGRTDNE+KNYWN H+++++    
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 147 ------KPKTESSTKHEGKPKDL 160
                 +P  ESS   + KP  L
Sbjct: 121 IDPTSHRPIQESSASQDSKPTQL 143

[Close]

BLAST of CsaV3_6G012340 vs. Swiss-Prot
Match: sp|Q9SGU3|MYB72_ARATH (Transcription factor MYB72 OS=Arabidopsis thaliana OX=3702 GN=MYB72 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.1e-42
Identity = 89/201 (44.28%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK+ VKRG WS +ED  L  +I+K+G   WR +P+LAGL+RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKTES 148
           P +KRGN++ +E + I   HQT GN+WS IA+ LPGRTDNE+KN WN HLKK++ P + S
Sbjct: 65  PDVKRGNFSKKEEDAIIHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRLTPSSSS 124

Query: 149 STKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVINWR 208
           S          SLS  ++  T  D  + C      + S    SQ +++S  + G  ++ +
Sbjct: 125 S----------SLSSTHDQSTKADHDKNCDGAQEEIHSGLNESQNSATSSHHQGECMHTK 184

Query: 209 MEDYNI---DQLQISGYYDDF 227
            E + +   +++Q    +DDF
Sbjct: 185 PELHEVNGLNEIQFLLDHDDF 195

[Close]

BLAST of CsaV3_6G012340 vs. Swiss-Prot
Match: sp|Q42379|MYB7_ARATH (Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.0e-42
Identity = 77/146 (52.74%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           M R+P  +K+ + +GAW+ EED++L +YI+ +G   WR +PR AGL+RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRP LKRGN+T++E+ELI KLH   GN+WS IAA+LPGRTDNE+KNYWN H+K+++  K 
Sbjct: 61  LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKG 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKD 173
                H G    ++ + + + K +KD
Sbjct: 121 IDPATHRG----INEAKISDLKKTKD 142

[Close]

BLAST of CsaV3_6G012340 vs. Swiss-Prot
Match: sp|Q9LTV4|MYB10_ARATH (Transcription factor MYB10 OS=Arabidopsis thaliana OX=3702 GN=MYB10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK  VKRG WS EE ++LR++I K G   WR +P+LAGLMRCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQV 143
           PGLKRGN+T EE + I  LHQ +GN+WS IA+  PGRTDNE+KN WN HLKK++
Sbjct: 65  PGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRL 118

[Close]

BLAST of CsaV3_6G012340 vs. Swiss-Prot
Match: sp|Q6K1S6|MYB30_ORYSJ (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-41
Identity = 79/131 (60.31%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           M RAP  +K G+KRG W+ EED+ L A+IE++G   WR +PR AGL+RCGKSCRLRW+NY
Sbjct: 1   MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRP +KRGN+T EE + I  LH   GNRWS IAA+LPGRTDNE+KN W+ HLKK+++PK 
Sbjct: 61  LRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEPK- 120

Query: 147 ESSTKHEGKPK 158
            SS +    PK
Sbjct: 121 PSSGREAAAPK 130

[Close]

BLAST of CsaV3_6G012340 vs. Swiss-Prot
Match: sp|Q6R0A6|MYB63_ARATH (Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-41
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 29  RAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYLR 88
           RAP  DK  VKRG WS EED KL ++I+K+G   WR +P+ +GL+RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLR 64

Query: 89  PGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQV------ 148
           P LKRGN+T+EE E I KLH  +GN+WS IA++LPGRTDNE+KN W+ HLKK++      
Sbjct: 65  PDLKRGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSSGT 124

Query: 149 --KPKTESSTKHEGKPKDLSLSHVYEA 168
             +P +  S+    + KD   SHV ++
Sbjct: 125 ADEPASPCSSDSVSRGKDDKSSHVEDS 151

[Close]

BLAST of CsaV3_6G012340 vs. TrEMBL
Match: tr|A0A0A0KAD1|A0A0A0KAD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G121970 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 6.8e-147
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP 60
           MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP
Sbjct: 1   MSYFHSLLSXXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGP 60

Query: 61  WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA 120
           WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA
Sbjct: 61  WKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTIAA 120

Query: 121 KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST 180
           KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST
Sbjct: 121 KLPGRTDNEVKNYWNAHLKKQVKPKTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSST 180

Query: 181 FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA 240
           FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA
Sbjct: 181 FGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNA 240

Query: 241 FSVDYGIEMFSPQQQYETAYDHNYCDLFC 270
           FSVDYGIEMFSPQQQYETAYDHNYCDLFC
Sbjct: 241 FSVDYGIEMFSPQQQYETAYDHNYCDLFC 269

[Close]

BLAST of CsaV3_6G012340 vs. TrEMBL
Match: tr|A0A1S3BIL1|A0A1S3BIL1_CUCME (transcription repressor MYB6-like OS=Cucumis melo OX=3656 GN=LOC103490478 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 5.1e-134
Identity = 250/272 (91.91%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MSYFHSLLS--XXXXXXXXXXXXXXXXXMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY 60
           MSYFHS+LS  XXXXXXXXXXXXXXXX MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY
Sbjct: 1   MSYFHSVLSXXXXXXXXXXXXXXXXXXIMVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKY 60

Query: 61  GPWKWREVPRLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQTHGNRWSTI 120
           GPWKWREVP LAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQ +GNRWSTI
Sbjct: 61  GPWKWREVPTLAGLMRCGKSCRLRWLNYLRPGLKRGNYTNEENELICKLHQKYGNRWSTI 120

Query: 121 AAKLPGRTDNEVKNYWNAHLKKQVKPKTESST-KHEGKPKDLSLSHVYEAKTSKDFAEYC 180
           AAKLPGRTDNEVKN+WNAHLKKQVKPKTESST KHEGKPK+L LSHVYEAKTSKDFAEYC
Sbjct: 121 AAKLPGRTDNEVKNHWNAHLKKQVKPKTESSTIKHEGKPKELRLSHVYEAKTSKDFAEYC 180

Query: 181 SSTFGILESSSCLSQQTSSSDDNFGTVINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNE 240
           SSTFGI+ESSSC SQ+TSSSDDNFGT INW MEDYNIDQLQI GYYD+FWTEPYVWDHN+
Sbjct: 181 SSTFGIVESSSCFSQETSSSDDNFGTEINWGMEDYNIDQLQICGYYDNFWTEPYVWDHNQ 240

Query: 241 TNAFSVDYGIEMFSPQQQYETAYDHNYCDLFC 270
           TNAFS DYGI MFSPQQQYET YDHNYCDLFC
Sbjct: 241 TNAFSEDYGIRMFSPQQQYETTYDHNYCDLFC 272

[Close]

BLAST of CsaV3_6G012340 vs. TrEMBL
Match: tr|A0A068UUA9|A0A068UUA9_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00035177001 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 103/221 (46.61%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAP VDK+GVK+GAWS EED KLRAY+ +YG W WR++P+ AGL RCGKSCRLRW+NY
Sbjct: 1   MVRAPSVDKNGVKKGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPK- 146
           L+PG++RG YT EE +LI KLH+ +GNRWS IAAKLPGRTDN++KN+W+ HLKK+ K   
Sbjct: 61  LKPGVRRGKYTIEEEDLIIKLHEQYGNRWSAIAAKLPGRTDNDIKNHWHTHLKKRNKQTQ 120

Query: 147 -TESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTS-SSDDNFGT 206
            +E S   +   +      +  + +S D            +S    +  +S S D     
Sbjct: 121 LSERSQNMDDADQXXXXXAMSTSGSSTDQKREMDPNASAADSLDAYTDISSLSCDSTLFD 180

Query: 207 VINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNAFSVD 245
            ++W  +D N     ++  ++ FWTEP+  D + +N  SVD
Sbjct: 181 CVDWVADDSNSSVESLTEPFESFWTEPFALDTSFSNYISVD 221

[Close]

BLAST of CsaV3_6G012340 vs. TrEMBL
Match: tr|A0A068UTL8|A0A068UTL8_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00035175001 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49
Identity = 102/218 (46.79%), Postives = 141/218 (64.68%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAP VDK+G+K+GAWS EED KLRAY+ +YG W WR++P+ AGL RCGKSCRLRW+NY
Sbjct: 1   MVRAPSVDKNGMKKGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVK--P 146
           L+PG++RG YT EE +LI KLH+ +GNRWS IAAKLP RTDN++KN+W+ HLKK+ K  P
Sbjct: 61  LKPGVRRGKYTIEEEDLIIKLHEQYGNRWSAIAAKLPARTDNDIKNHWHTHLKKRYKESP 120

Query: 147 KTESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTS-SSDDNFGT 206
             E S   +   ++   S ++ + +S D       T    +S    +  +S S D     
Sbjct: 121 ICEGSQHIDDADQNEQSSAMFTSGSSTDQKTEVDPTTSASDSLDAYTDISSLSCDSTLFD 180

Query: 207 VINWRMEDYNIDQLQISGYYDDFWTEPYVWDHNETNAF 242
            ++W  +D N     ++  ++ FWTEP+  D +  N F
Sbjct: 181 GVDWAADDSNSSVESLTEPFESFWTEPFALDTSFNNWF 218

[Close]

BLAST of CsaV3_6G012340 vs. TrEMBL
Match: tr|A0A2N9J0V5|A0A2N9J0V5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57941 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.9e-49
Identity = 107/210 (50.95%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86
           MVRAP  DK+GVK+GAWS+EED KL+AYI+++G W WRE+P+ AGL RCGKSCRLRW+NY
Sbjct: 1   MVRAPFYDKNGVKKGAWSVEEDNKLKAYIQRFGHWNWRELPKFAGLSRCGKSCRLRWMNY 60

Query: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146
           LRP +KRGNYT EE  +I KLH+  GN+WS IAA+LPGRTDN++KNYW+AHLKK  K   
Sbjct: 61  LRPNVKRGNYTEEEELMIIKLHEELGNKWSMIAARLPGRTDNDIKNYWHAHLKKCTKENP 120

Query: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206
            +S     K K  S   +Y++       E  SS F  L           S D+   + IN
Sbjct: 121 TTS-----KMKKQS-DEIYQSP-----QETSSSGFSSL-----------SFDNALESGIN 180

Query: 207 WRMEDYNIDQLQISGYYDDFWTEPYVWDHN 237
           W  ED       +   + DFWTEP+V D++
Sbjct: 181 WIAEDSLAKLETLEQSFGDFWTEPFVMDNS 188

The following BLAST results are available for this feature:

BLAST of CsaV3_6G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140052.2	1.0e-146	100.00	PREDICTED: transcription repressor MYB6-like [Cucumis sativus] >KGN46680.1 hypot...	[more]
XP_008448223.1	7.7e-134	91.91	PREDICTED: transcription repressor MYB6-like [Cucumis melo]	[more]
XP_023512861.1	6.6e-85	70.08	transcription factor MYB30-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944612.1	7.3e-84	70.20	transcription factor MYB30-like [Cucurbita moschata]	[more]
XP_022140615.1	2.1e-83	65.61	transcription factor MYB30-like [Momordica charantia]	[more]

BLAST of CsaV3_6G012340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56160.1	3.4e-43	44.28	myb domain protein 72	[more]
AT2G16720.1	4.5e-43	52.74	myb domain protein 7	[more]
AT3G12820.1	7.6e-43	65.79	myb domain protein 10	[more]
AT1G79180.1	2.9e-42	54.42	myb domain protein 63	[more]
AT4G38620.1	6.4e-42	53.85	myb domain protein 4	[more]

BLAST of CsaV3_6G012340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SGU3\|MYB72_ARATH	6.1e-42	44.28	Transcription factor MYB72 OS=Arabidopsis thaliana OX=3702 GN=MYB72 PE=1 SV=1	[more]
sp\|Q42379\|MYB7_ARATH	8.0e-42	52.74	Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1	[more]
sp\|Q9LTV4\|MYB10_ARATH	1.4e-41	65.79	Transcription factor MYB10 OS=Arabidopsis thaliana OX=3702 GN=MYB10 PE=2 SV=1	[more]
sp\|Q6K1S6\|MYB30_ORYSJ	5.2e-41	60.31	Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=...	[more]
sp\|Q6R0A6\|MYB63_ARATH	5.2e-41	54.42	Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1	[more]

BLAST of CsaV3_6G012340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAD1\|A0A0A0KAD1_CUCSA	6.8e-147	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G121970 PE=4 SV=1	[more]
tr\|A0A1S3BIL1\|A0A1S3BIL1_CUCME	5.1e-134	91.91	transcription repressor MYB6-like OS=Cucumis melo OX=3656 GN=LOC103490478 PE=4 S...	[more]
tr\|A0A068UUA9\|A0A068UUA9_COFCA	1.7e-49	46.61	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00035177001 PE=4 ...	[more]
tr\|A0A068UTL8\|A0A068UTL8_COFCA	2.3e-49	46.79	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00035175001 PE=4 ...	[more]
tr\|A0A2N9J0V5\|A0A2N9J0V5_FAGSY	3.9e-49	50.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57941 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G012340.1	CsaV3_6G012340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 39..89 e-value: 7.0E-11 score: 52.1 coord: 92..140 e-value: 3.5E-16 score: 69.8
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 40..87 e-value: 1.2E-13 score: 50.9 coord: 93..138 e-value: 5.9E-15 score: 55.1
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 95..138 e-value: 2.01167E-10 score: 53.7334
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 42..87 e-value: 8.19867E-9 score: 49.4962
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 38..93 e-value: 1.2E-17 score: 65.6
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 94..161 e-value: 3.6E-21 score: 77.0
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 27..193
None	No IPR available	PANTHER	PTHR10641:SF541	SUBFAMILY NOT NAMED	coord: 27..193
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 92..142 score: 19.247
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 35..91 score: 24.044
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 37..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G012340	CSPI06G09890	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G012340	Cucsa.119640	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G012340	CmoCh20G005930	Cucurbita moschata (Rifu)	cmocucB0665
CsaV3_6G012340	CsGy6G010010	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G012340	ClCG02G011350	Watermelon (Charleston Gray)	cucwcgB475
CsaV3_6G012340	MELO3C035029.2	Melon (DHL92) v3.6.1	cucmedB444
CsaV3_6G012340	Cla97C02G037050	Watermelon (97103) v2	cucwmbB464
CsaV3_6G012340	Bhi10G000913	Wax gourd	cucwgoB621

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G012340	Cucurbita pepo (Zucchini)	cpecucB0928
CsaV3_6G012340	Bottle gourd (USVL1VR-Ls)	cuclsiB432
CsaV3_6G012340	Melon (DHL92) v3.5.1	cucmeB431
CsaV3_6G012340	Melon (DHL92) v3.5.1	cucmeB453
CsaV3_6G012340	Melon (DHL92) v3.6.1	cucmedB421
CsaV3_6G012340	Wax gourd	cucwgoB639
CsaV3_6G012340	Silver-seed gourd	carcucB0028
CsaV3_6G012340	Silver-seed gourd	carcucB0372
CsaV3_6G012340	Cucurbita maxima (Rimu)	cmacucB0764
CsaV3_6G012340	Cucurbita moschata (Rifu)	cmocucB0747
CsaV3_6G012340	Cucurbita pepo (Zucchini)	cpecucB0355