CsaV3_6G012320 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGAACAATAATGCATGGGTGACAAAGGTGAGTAGTTAGGGGGAGAAGAAAAGAAAGGTTTCTTTCCGTGTGGGAATGCAATTTACAGAGACGAAAGGGCCCTTCTTTCCTGCGGAGAATGTGGGGTCAGAAAGAGACAAAACCTTTTCTAAAAGGCAACTTTTCGTTGGAATTATTTCTACTTGATTGACGTTTTAGGTTTGTCTTTTAAGGTAACTCCACTAATGTAAATGTTTGTTGTTTCTCTCCTCCAAGTATTCTCAATTTCTCTCTCTCATCTCCAACTTCAAATTGGGAATTTATATTTGTCACTTCTCTAACTGGATCAGATGCTCATACCATCTATTTCTTCTTTCTTACCTAATACACCAATTAAACATCATCAACAGAAGAAGATGAACCATGGGTGGGTTTGGTTTAGGTACTTTTACTCCACCACAGTTCCAAAAAGTTCAAAAAAGTAAGACCTCCACCAAACCCAGTGGCAATTTGATGACTTCTTATACAAACATAAACTTTATTTATCCAATGGTCATTGCAATGTATACCAAAAAAGACATCACAAAACAAACTGCCAAATTTCTTTTTCTTACACCACTCTCTCAAATCCAGCAAAACGAATCTCTTGCTTTTTATTTCTTTTCCATTCTCTACGATCCATTAGGTTAGAATACCATTTTGATTTCATTTTAGAATACCAAAGAGAAATGCCAATAAATCAATTCCAATTCCAATTAGGTAAAATAAATGTATTATAAAACTTGTCCAGAAATGGCCGCGGCAATTTATAACCCTTTGTTTCTCTTTCTATTCTCACTTTAGAAGATGTTGAGAACCCATGTGGTCGTATCCTGTTTTCTTTATCTCCGTGACCATCTTTCAAACCATACCAACTTCGTCTTCATTTCTATGCCTCCCATTTTATAAAATTCGATCGCCCTTTTTAGTCAAATGAGCTTTAATCTTCGTTTTCTCAAATAGCCTATACTTCAAAATCAAAACCGAACAAAGGAAGTTTAAAATATGATCTCCATACTTGCAATTGCAACACTTGTTATTTCAACGACTCTGTTCCCGATTTCCGTTGCTGTGTCCGTACGAGGGCAATACTCGGTTCCGGCCTTCCCAGTGGAAACCGAAAATCAAGCCTGCCGGTTGGACTTATCGGACGAGCTATTCGGGGGAGTGAGTCAAGCCTGCAATGGGAACCTAGACCGGAGCCGGTGCTGTCCAGTGCTAGCCGCATGGCTCTTCGCGGCTCACGCTAGGTCGGCGTTGGAAGTGTCGGCTCCAGCTCCATCAGCCGAAATAGATCTGCCATTGATGCCAGACGATTCCCAGAAATGCGTAGAATCACTTCAGAGCTCATTGGTGAGGCGCAACATCAGAATTCCCCAGCCGAATTCCAGCTGTGACGCCGTTTTGTGCTTCTGTGGAATTCGACTCCATCAGATAAGTTCCTTGTCTTGCCCTGCCGCATTCAATCTCTCCGGCTTCCAAAATGCATCCCCGACAGCGGCGGTTCGTGATTTGGAGACGAATTGTCGTAATGCCTCTTACTCTGGTTGCACTAAATGCCTTGGCGCACTTCAAAAGGTACAAAAAGAAAAGAAGAAAAAAGACTAATCCAAACTTTTGTACAGTGGGTTACTGAAAATTGGGTTATTGGTTAAGAATTATGAATTGTATTGGGAATTAGGTAAAGGGGGCTGGAGATAGGAGCACGACGGCAAGAGCAAGAAAAATGTTCAACAGAGACTGCCAATTGATGGGGCTGACATGGTTGCTTGCTCGTAACAAAACGGCGTACATTCCGACGGTTTCGGCGGTTTTGAGGGCAATTATGTACAGTGCCCATCCGCCTCACAATTCCATGTGCAGCCCAGATCAAGAGAACATGCCACTGGCTGTTGATTCTCTCCAATTTGATGACGCACATTCAATTTCACATTCACAACCCTCCTCAATTTTTATTTTTTCATTTTTGCGCTTACTGCTAACGCCCTTTGTTTGCCTGTTCTTAGTAAAAATATGGCCGTAGTTGGTTGGACTGTTTTGGAGGGGAAGCCCACATCGTGTCACGTGAAGCTGTTGATTTTCTGTCTTTTATACCCTACCGTAAATTCTTGATACAGCGGTAAATACTTTTGTTTTCTTTTAAATGTATTCAATTCTATTTGGTATATGAATATGAATTTTATATCCTCAGTTCATTTAGTTTCATTATTGTGACTCTCAAATATCGTATTTGGAGTTGGAGTTCAACAAATGTTCCAAATTTCAACACAGACCGGGTCCATCTGTCCTATATATAATTGTCTTTGAAAGGTCAAGAACTCCAGAGTCACACCATCAATTAAAAACTATAATTCCAAGAGTTGCGATTCTGTCCTTTGAAATTTTAAATTAATACTGAATCAATTAAGATTTTAAACTTTTGTTGATGAATCAACTAAACTCTTTATTAGAACTTCATCCATCATAGTAAAGTTTTTATTCATGGTCTTAATCTACTTTTCTTTCTTGATTAGAATTTTTTTTTTGTTCTAAATTTT ATGATCTCCATACTTGCAATTGCAACACTTGTTATTTCAACGACTCTGTTCCCGATTTCCGTTGCTGTGTCCGTACGAGGGCAATACTCGGTTCCGGCCTTCCCAGTGGAAACCGAAAATCAAGCCTGCCGGTTGGACTTATCGGACGAGCTATTCGGGGGAGTGAGTCAAGCCTGCAATGGGAACCTAGACCGGAGCCGGTGCTGTCCAGTGCTAGCCGCATGGCTCTTCGCGGCTCACGCTAGGTCGGCGTTGGAAGTGTCGGCTCCAGCTCCATCAGCCGAAATAGATCTGCCATTGATGCCAGACGATTCCCAGAAATGCGTAGAATCACTTCAGAGCTCATTGGTGAGGCGCAACATCAGAATTCCCCAGCCGAATTCCAGCTGTGACGCCGTTTTGTGCTTCTGTGGAATTCGACTCCATCAGATAAGTTCCTTGTCTTGCCCTGCCGCATTCAATCTCTCCGGCTTCCAAAATGCATCCCCGACAGCGGCGGTTCGTGATTTGGAGACGAATTGTCGTAATGCCTCTTACTCTGGTTGCACTAAATGCCTTGGCGCACTTCAAAAGGTAAAGGGGGCTGGAGATAGGAGCACGACGGCAAGAGCAAGAAAAATGTTCAACAGAGACTGCCAATTGATGGGGCTGACATGGTTGCTTGCTCGTAACAAAACGGCGTACATTCCGACGGTTTCGGCGGTTTTGAGGGCAATTATGTACAGTGCCCATCCGCCTCACAATTCCATGTGCAGCCCAGATCAAGAGAACATGCCACTGGCTGTTGATTCTCTCCAATTTGATGACGCACATTCAATTTCACATTCACAACCCTCCTCAATTTTTATTTTTTCATTTTTGCGCTTACTGCTAACGCCCTTTGTTTGCCTGTTCTTAGTAAAAATATGGCCGTAG ATGATCTCCATACTTGCAATTGCAACACTTGTTATTTCAACGACTCTGTTCCCGATTTCCGTTGCTGTGTCCGTACGAGGGCAATACTCGGTTCCGGCCTTCCCAGTGGAAACCGAAAATCAAGCCTGCCGGTTGGACTTATCGGACGAGCTATTCGGGGGAGTGAGTCAAGCCTGCAATGGGAACCTAGACCGGAGCCGGTGCTGTCCAGTGCTAGCCGCATGGCTCTTCGCGGCTCACGCTAGGTCGGCGTTGGAAGTGTCGGCTCCAGCTCCATCAGCCGAAATAGATCTGCCATTGATGCCAGACGATTCCCAGAAATGCGTAGAATCACTTCAGAGCTCATTGGTGAGGCGCAACATCAGAATTCCCCAGCCGAATTCCAGCTGTGACGCCGTTTTGTGCTTCTGTGGAATTCGACTCCATCAGATAAGTTCCTTGTCTTGCCCTGCCGCATTCAATCTCTCCGGCTTCCAAAATGCATCCCCGACAGCGGCGGTTCGTGATTTGGAGACGAATTGTCGTAATGCCTCTTACTCTGGTTGCACTAAATGCCTTGGCGCACTTCAAAAGGTAAAGGGGGCTGGAGATAGGAGCACGACGGCAAGAGCAAGAAAAATGTTCAACAGAGACTGCCAATTGATGGGGCTGACATGGTTGCTTGCTCGTAACAAAACGGCGTACATTCCGACGGTTTCGGCGGTTTTGAGGGCAATTATGTACAGTGCCCATCCGCCTCACAATTCCATGTGCAGCCCAGATCAAGAGAACATGCCACTGGCTGTTGATTCTCTCCAATTTGATGACGCACATTCAATTTCACATTCACAACCCTCCTCAATTTTTATTTTTTCATTTTTGCGCTTACTGCTAACGCCCTTTGTTTGCCTGTTCTTAGTAAAAATATGGCCGTAG MISILAIATLVISTTLFPISVAVSVRGQYSVPAFPVETENQACRLDLSDELFGGVSQACNGNLDRSRCCPVLAAWLFAAHARSALEVSAPAPSAEIDLPLMPDDSQKCVESLQSSLVRRNIRIPQPNSSCDAVLCFCGIRLHQISSLSCPAAFNLSGFQNASPTAAVRDLETNCRNASYSGCTKCLGALQKVKGAGDRSTTARARKMFNRDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSAHPPHNSMCSPDQENMPLAVDSLQFDDAHSISHSQPSSIFIFSFLRLLLTPFVCLFLVKIWP
BLAST of CsaV3_6G012320 vs. NCBI nr
Match: XP_004139964.1 (PREDICTED: uncharacterized GPI-anchored protein At4g28100-like [Cucumis sativus] >KGN46678.1 hypothetical protein Csa_6G121950 [Cucumis sativus]) HSP 1 Score: 599.7 bits (1545), Expect = 5.4e-168 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. NCBI nr
Match: XP_008448226.1 (PREDICTED: uncharacterized GPI-anchored protein At4g28100-like [Cucumis melo]) HSP 1 Score: 577.8 bits (1488), Expect = 2.2e-161 Identity = 294/304 (96.71%), Postives = 298/304 (98.03%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. NCBI nr
Match: XP_022947263.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita moschata]) HSP 1 Score: 473.4 bits (1217), Expect = 5.8e-130 Identity = 244/297 (82.15%), Postives = 265/297 (89.23%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. NCBI nr
Match: XP_023532424.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129 Identity = 244/297 (82.15%), Postives = 263/297 (88.55%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. NCBI nr
Match: XP_022970732.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita maxima]) HSP 1 Score: 467.6 bits (1202), Expect = 3.2e-128 Identity = 242/297 (81.48%), Postives = 263/297 (88.55%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TAIR10
Match: AT4G28100.1 (unknown protein) HSP 1 Score: 370.2 bits (949), Expect = 1.3e-102 Identity = 200/303 (66.01%), Postives = 239/303 (78.88%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TAIR10
Match: AT3G18050.1 (unknown protein) HSP 1 Score: 190.3 bits (482), Expect = 1.8e-48 Identity = 124/338 (36.69%), Postives = 180/338 (53.25%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. Swiss-Prot
Match: sp|Q9SUC9|UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana OX=3702 GN=At4g28100 PE=2 SV=1) HSP 1 Score: 370.2 bits (949), Expect = 2.3e-101 Identity = 200/303 (66.01%), Postives = 239/303 (78.88%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TrEMBL
Match: tr|A0A0A0KAY3|A0A0A0KAY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G121950 PE=4 SV=1) HSP 1 Score: 599.7 bits (1545), Expect = 3.6e-168 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TrEMBL
Match: tr|A0A1S3BJT3|A0A1S3BJT3_CUCME (uncharacterized GPI-anchored protein At4g28100-like OS=Cucumis melo OX=3656 GN=LOC103490480 PE=4 SV=1) HSP 1 Score: 577.8 bits (1488), Expect = 1.4e-161 Identity = 294/304 (96.71%), Postives = 298/304 (98.03%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TrEMBL
Match: tr|A0A2I4H964|A0A2I4H964_9ROSI (uncharacterized GPI-anchored protein At4g28100-like OS=Juglans regia OX=51240 GN=LOC109014629 PE=4 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 1.9e-113 Identity = 208/276 (75.36%), Postives = 236/276 (85.51%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TrEMBL
Match: tr|A0A2N9GM95|A0A2N9GM95_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28614 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 1.6e-112 Identity = 213/285 (74.74%), Postives = 240/285 (84.21%), Query Frame = 0
BLAST of CsaV3_6G012320 vs. TrEMBL
Match: tr|M5WT41|M5WT41_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G228400 PE=4 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 1.8e-111 Identity = 218/286 (76.22%), Postives = 238/286 (83.22%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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