CsaV3_6G010200 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G010200
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 8309345 .. 8309515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAGGTTGACCGCCTAAAGGTTGTAGCTGAAGAGTTAGGCAAAGAAATTGAGAGGATGAGTCCTCTTGAACCAAGATTAAAACCTAAAGATTCTGGGCTTGTTGATCCTGCACACTCAAAGAAAGGCAAAGGAAAAGTTGGAGCATCTAGACCCAAGGGTGCCTAG

mRNA sequence

ATGCAAGAGGTTGACCGCCTAAAGGTTGTAGCTGAAGAGTTAGGCAAAGAAATTGAGAGGATGAGTCCTCTTGAACCAAGATTAAAACCTAAAGATTCTGGGCTTGTTGATCCTGCACACTCAAAGAAAGGCAAAGGAAAAGTTGGAGCATCTAGACCCAAGGGTGCCTAG

Coding sequence (CDS)

ATGCAAGAGGTTGACCGCCTAAAGGTTGTAGCTGAAGAGTTAGGCAAAGAAATTGAGAGGATGAGTCCTCTTGAACCAAGATTAAAACCTAAAGATTCTGGGCTTGTTGATCCTGCACACTCAAAGAAAGGCAAAGGAAAAGTTGGAGCATCTAGACCCAAGGGTGCCTAG

Protein sequence

MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA

Homology

[Close]

BLAST of CsaV3_6G010200 vs. NCBI nr
Match: KGN46665.1 (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 57
          MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA
Sbjct: 1  MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of CsaV3_6G010200 vs. NCBI nr
Match: KGN57723.1 (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 57
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 93

[Close]

BLAST of CsaV3_6G010200 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 53
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 82  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 132

[Close]

BLAST of CsaV3_6G010200 vs. TrEMBL
Match: tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 57
          MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA
Sbjct: 1  MQEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of CsaV3_6G010200 vs. TrEMBL
Match: tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 57
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 93

[Close]

BLAST of CsaV3_6G010200 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 53
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 82  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 132

The following BLAST results are available for this feature:

BLAST of CsaV3_6G010200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46665.1	5.4e-21	100.00	hypothetical protein Csa_6G119890 [Cucumis sativus]	[more]
KGN57723.1	2.3e-08	63.64	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]
KGN49573.1	3.4e-07	62.75	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]

BLAST of CsaV3_6G010200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G010200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G010200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAB8\|A0A0A0KAB8_CUCSA	3.6e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1	[more]
tr\|A0A0A0L7E0\|A0A0A0L7E0_CUCSA	1.6e-08	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1	[more]
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	2.2e-07	62.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G010200.1	CsaV3_6G010200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..44

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G010200	Silver-seed gourd	carcucB0896
CsaV3_6G010200	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G010200	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G010200	Cucurbita maxima (Rimu)	cmacucB0667
CsaV3_6G010200	Cucurbita maxima (Rimu)	cmacucB0757
CsaV3_6G010200	Cucurbita moschata (Rifu)	cmocucB0745
CsaV3_6G010200	Cucurbita pepo (Zucchini)	cpecucB0925
CsaV3_6G010200	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G010200	Bottle gourd (USVL1VR-Ls)	cuclsiB432
CsaV3_6G010200	Melon (DHL92) v3.5.1	cucmeB431
CsaV3_6G010200	Melon (DHL92) v3.6.1	cucmedB421
CsaV3_6G010200	Watermelon (97103) v1	cucwmB469
CsaV3_6G010200	Watermelon (97103) v2	cucwmbB449
CsaV3_6G010200	Watermelon (97103) v2	cucwmbB465
CsaV3_6G010200	Wax gourd	cucwgoB639