CsaV3_6G009930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 8056286 .. 8056601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGGTATGCAATACGGTTGGGTGGGAGGCATATTTATTGGCCATTTGGGACTTTATCCTCAACTGCCATCCCCTACTGCACACCACCTGTTCGATCAACGCAGCTTTTCTCTCTCAAAATTTCACTCTGACAGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

mRNA sequence

ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

Coding sequence (CDS)

ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

Protein sequence

MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFSV
Homology
[Close]
BLAST of CsaV3_6G009930 vs. NCBI nr
Match: KGN46634.1 (hypothetical protein Csa_6G116670 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60
          MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS
Sbjct: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]
BLAST of CsaV3_6G009930 vs. TrEMBL
Match: tr|A0A0A0KCR8|A0A0A0KCR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116670 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60
          MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS
Sbjct: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60

Query: 61 V 62
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46634.16.0e-26100.00hypothetical protein Csa_6G116670 [Cucumis sativus][more]
BLAST of CsaV3_6G009930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCR8|A0A0A0KCR8_CUCSA4.0e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009930.1CsaV3_6G009930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009930Cucumber (Chinese Long) v3cuccucB214
CsaV3_6G009930Silver-seed gourdcarcucB0231
CsaV3_6G009930Silver-seed gourdcarcucB0382
CsaV3_6G009930Silver-seed gourdcarcucB0383
CsaV3_6G009930Silver-seed gourdcarcucB0896
CsaV3_6G009930Silver-seed gourdcarcucB1112
CsaV3_6G009930Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009930Cucumber (Gy14) v2cgybcucB344
CsaV3_6G009930Cucumber (Gy14) v1cgycucB115
CsaV3_6G009930Cucumber (Gy14) v1cgycucB159
CsaV3_6G009930Cucurbita maxima (Rimu)cmacucB0164
CsaV3_6G009930Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009930Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009930Cucurbita maxima (Rimu)cmacucB0680
CsaV3_6G009930Cucurbita maxima (Rimu)cmacucB0757
CsaV3_6G009930Cucurbita moschata (Rifu)cmocucB0153
CsaV3_6G009930Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009930Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009930Cucurbita moschata (Rifu)cmocucB0663
CsaV3_6G009930Cucurbita moschata (Rifu)cmocucB0745
CsaV3_6G009930Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009930Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009930Cucurbita pepo (Zucchini)cpecucB0352
CsaV3_6G009930Cucurbita pepo (Zucchini)cpecucB0925
CsaV3_6G009930Wild cucumber (PI 183967)cpicucB364
CsaV3_6G009930Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009930Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009930Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009930Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009930Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009930Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009930Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009930Watermelon (Charleston Gray)cucwcgB478
CsaV3_6G009930Watermelon (Charleston Gray)cucwcgB463
CsaV3_6G009930Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009930Watermelon (97103) v1cucwmB469
CsaV3_6G009930Watermelon (97103) v1cucwmB541
CsaV3_6G009930Watermelon (97103) v1cucwmB545
CsaV3_6G009930Watermelon (97103) v2cucwmbB450
CsaV3_6G009930Watermelon (97103) v2cucwmbB449
CsaV3_6G009930Watermelon (97103) v2cucwmbB465
CsaV3_6G009930Wax gourdcucwgoB579
CsaV3_6G009930Wax gourdcucwgoB623