CsaV3_6G009820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 7980132 .. 7980390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAGAGTATAGAAGGACCAAAGCTAGTGTTGGAGCCTAGTAAAGGGGCCAGTTAGTGGCTTTAGGACTGGAAATTAG

mRNA sequence

ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG

Coding sequence (CDS)

ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG

Protein sequence

MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQVK
Homology
[Close]
BLAST of CsaV3_6G009820 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYE KYTELS Y + IVA ES+RC+RFERGLR EIRTL+  IAKWTN  QLVEI L V
Sbjct: 110 VAEYEMKYTELSRYAEMIVASESERCRRFERGLRFEIRTLVTTIAKWTNFSQLVEIALCV 169

Query: 61  K 62
           +
Sbjct: 170 E 170

[Close]
BLAST of CsaV3_6G009820 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y + IVA ESDRC+RFERGLR EIRT + AIAKW N  QLVE  L+V
Sbjct: 58  VVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRV 117

Query: 61  K 62
           +
Sbjct: 118 E 118

[Close]
BLAST of CsaV3_6G009820 vs. NCBI nr
Match: XP_016903324.1 (PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y + IVA ESDRC+ FERGLR EIRTL+  IAKWT+  QLVE  L+V
Sbjct: 110 VAEYERKYTELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAKWTDFSQLVETALRV 169

Query: 61  K 62
           +
Sbjct: 170 E 170

[Close]
BLAST of CsaV3_6G009820 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKW 48
           + EYERKYTELS Y + IVA ESDRC+RFERGLR EIRT + AIAKW
Sbjct: 172 VAEYERKYTELSRYVEMIVASESDRCRRFERGLRFEIRTPVTAIAKW 218

[Close]
BLAST of CsaV3_6G009820 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAK 47
           + EYERKYTELS Y + IVA+ESDRC RFERGLR EIRT + AIAK
Sbjct: 172 VAEYERKYTELSRYVEVIVAYESDRCCRFERGLRFEIRTQVTAIAK 217

[Close]
BLAST of CsaV3_6G009820 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYE KYTELS Y + IVA ES+RC+RFERGLR EIRTL+  IAKWTN  QLVEI L V
Sbjct: 110 VAEYEMKYTELSRYAEMIVASESERCRRFERGLRFEIRTLVTTIAKWTNFSQLVEIALCV 169

Query: 61  K 62
           +
Sbjct: 170 E 170

[Close]
BLAST of CsaV3_6G009820 vs. TrEMBL
Match: tr|A0A1S4E521|A0A1S4E521_CUCME (uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y + IVA ESDRC+ FERGLR EIRTL+  IAKWT+  QLVE  L+V
Sbjct: 110 VAEYERKYTELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAKWTDFSQLVETALRV 169

Query: 61  K 62
           +
Sbjct: 170 E 170

[Close]
BLAST of CsaV3_6G009820 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y + IVA ESDRC+RFERGLR EIRT + AIAKW N  QLVE  L+V
Sbjct: 58  VVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRV 117

Query: 61  K 62
           +
Sbjct: 118 E 118

[Close]
BLAST of CsaV3_6G009820 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKW 48
           + EYERKYTELS Y + IVA ESDRC+RFERGLR EIRT + AIAKW
Sbjct: 172 VAEYERKYTELSRYVEMIVASESDRCRRFERGLRFEIRTPVTAIAKW 218

[Close]
BLAST of CsaV3_6G009820 vs. TrEMBL
Match: tr|A0A1S3BJ07|A0A1S3BJ07_CUCME (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAK 47
           + EYERKYTELS Y + IVA+ESDRC RFERGLR EIRT + AIAK
Sbjct: 172 VAEYERKYTELSRYVEVIVAYESDRCCRFERGLRFEIRTQVTAIAK 217

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456815.12.6e-1368.85PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
XP_008464978.14.5e-1368.85PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
XP_016903324.14.5e-1367.21PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo][more]
XP_016899851.13.6e-1074.47PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
XP_008448403.13.9e-0973.91PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
BLAST of CsaV3_6G009820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME1.7e-1368.85uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
tr|A0A1S4E521|A0A1S4E521_CUCME3.0e-1367.21uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=... [more]
tr|A0A1S3CMU0|A0A1S3CMU0_CUCME3.0e-1368.85uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=... [more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME2.4e-1074.47uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S3BJ07|A0A1S3BJ07_CUCME2.6e-0973.91uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009820.1CsaV3_6G009820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G009820CSPI06G09420Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009820Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009820Cucumber (Gy14) v2cgybcucB344
CsaV3_6G009820Cucumber (Gy14) v1cgycucB115
CsaV3_6G009820Cucumber (Gy14) v1cgycucB159
CsaV3_6G009820Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009820Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009820Cucurbita maxima (Rimu)cmacucB0680
CsaV3_6G009820Cucurbita maxima (Rimu)cmacucB0757
CsaV3_6G009820Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009820Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009820Cucurbita moschata (Rifu)cmocucB0663
CsaV3_6G009820Cucurbita moschata (Rifu)cmocucB0745
CsaV3_6G009820Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009820Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009820Cucurbita pepo (Zucchini)cpecucB0352
CsaV3_6G009820Cucurbita pepo (Zucchini)cpecucB0925
CsaV3_6G009820Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009820Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009820Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009820Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009820Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009820Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009820Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009820Watermelon (Charleston Gray)cucwcgB478
CsaV3_6G009820Watermelon (Charleston Gray)cucwcgB463
CsaV3_6G009820Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009820Watermelon (97103) v1cucwmB541
CsaV3_6G009820Watermelon (97103) v1cucwmB545
CsaV3_6G009820Watermelon (97103) v2cucwmbB450
CsaV3_6G009820Watermelon (97103) v2cucwmbB449
CsaV3_6G009820Watermelon (97103) v2cucwmbB465
CsaV3_6G009820Wax gourdcucwgoB579
CsaV3_6G009820Wax gourdcucwgoB623
CsaV3_6G009820Cucumber (Chinese Long) v3cuccucB214
CsaV3_6G009820Silver-seed gourdcarcucB0231
CsaV3_6G009820Silver-seed gourdcarcucB0382
CsaV3_6G009820Silver-seed gourdcarcucB0383
CsaV3_6G009820Silver-seed gourdcarcucB0896